Protein Info for Shew_2129 in Shewanella loihica PV-4

Annotation: exodeoxyribonuclease V, gamma subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1192 PF04257: Exonuc_V_gamma" amino acids 2 to 347 (346 residues), 354 bits, see alignment E=7.6e-110 TIGR01450: exodeoxyribonuclease V, gamma subunit" amino acids 2 to 1143 (1142 residues), 990.5 bits, see alignment E=5.4e-302 PF17946: RecC_C" amino acids 880 to 1118 (239 residues), 177.9 bits, see alignment E=2.3e-56

Best Hits

Predicted SEED Role

"Exodeoxyribonuclease V gamma chain (EC 3.1.11.5)" in subsystem DNA-replication (EC 3.1.11.5)

Isozymes

Compare fitness of predicted isozymes for: 3.1.11.5

Use Curated BLAST to search for 3.1.11.5

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QEU7 at UniProt or InterPro

Protein Sequence (1192 amino acids)

>Shew_2129 exodeoxyribonuclease V, gamma subunit (RefSeq) (Shewanella loihica PV-4)
MLYLVQSNRMEALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAA
LEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLKDDA
ILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQWQS
LLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLE
VLYFLAKRIDVVMLNLSPCQHYWGDIVDPKLRARMALQYGDKQQLAIDWESKLEVGNPLL
ANNGKMGRELLDLILELPENDTNFNFECYQDPGSNSLLHGVQQDILELCTRGETLGPDAE
LYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHDHLLEQLSQSDGLAPKDIVVMMPDVA
AYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSFLHLLGLNKSRFALTDILGILEV
PAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPAFEHNSWAFGIKRLILGYS
FSDEAPIYHDSLALPGVEGQSAQALGKLLNFIEAIDEFNLALGEHCPLSVRITQLQTLVE
TFYDCVDEELSQKQELLQAITRLSEELTATQYQSELELEVMQNWFTRHLTESRVGQRYLA
GSVNFCTLMPMRSIPFMLVCLLGMNDGVYPRVQHPVGFDLVAQEGPRKGDRSRRLDDRYL
FLEALLSAREQLYISYIGHSERDNSERIPSMLVSELIEYCQLCYLPENCAHLLKGSNADD
TSTADIAKIELAILDQLIITMPLQPFDERLYLADESEGAECEGAKSEPRRLRQSYSEQWC
PRALTEQDKQHDGEQGAKPASAGHFIEAPLSLVADEDKGEPLELSALIRFYRNPAQYFFN
RTLKLDLNLSIQADENDEPFALNPLSRYQLQSTLIEDAVKSGDERPSSELLERLRLSGQL
PLAPFDDLLLKQYQHDIRALVGRTLYLQGESSHTQDIDLLLSDSAATALVGRIDGVSAKG
LVNYRPGTANARDLIRVYLRHLCLNASVSDNSDVERHEATPWQRHSYLLDIGHFHAFAPI
TPEQALNQLSLWAEHYHQGQSQPLPFMPRTAFAYVEAEGEHIEKLIAAQPQWLDEQSNLG
EGQEAHYQRLFTFPDDFSEAGFGTIASTLLSPMLSLYHKAPLSELADFVEGQ