Protein Info for Shew_2120 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF13379: NMT1_2" amino acids 30 to 255 (226 residues), 29.2 bits, see alignment E=8.2e-11 PF09084: NMT1" amino acids 45 to 254 (210 residues), 44.5 bits, see alignment E=1.8e-15

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_2120)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QET8 at UniProt or InterPro

Protein Sequence (326 amino acids)

>Shew_2120 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MKAKGIVLLVLVVMGLLSINWWGGKAPATEPPIKLKIATSTTPLSAPLIIARELELFKPY
NLDIELIPLRGGHLCFQAMIQGVADLATSSETVIMFNGFQRSDFRLLASFVESDNDLKLL
TLNDEQPKSITQLSDKKIGMVKASSSEFFADAFLIISGHQQQDFQKVFMSPQALGPALLA
GDVDAISVWEPFGYKLIEEHGDTIYQYPGKGIYNLSFNLVTSAVNARLHEKQHADILRAL
KSAQNFINQHPQSAKQIISDYLDISLSELEWAWNDYVFRLSLNNSLISNLHAQARWAIAS
GAVDAQTTPDFRLLLDDSALKQALDN