Protein Info for Shew_1534 in Shewanella loihica PV-4

Annotation: integral membrane sensor hybrid histidine kinase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1140 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 66 to 86 (21 residues), see Phobius details amino acids 115 to 135 (21 residues), see Phobius details amino acids 155 to 174 (20 residues), see Phobius details amino acids 189 to 213 (25 residues), see Phobius details amino acids 239 to 257 (19 residues), see Phobius details amino acids 275 to 298 (24 residues), see Phobius details amino acids 321 to 349 (29 residues), see Phobius details amino acids 374 to 397 (24 residues), see Phobius details amino acids 404 to 426 (23 residues), see Phobius details amino acids 434 to 453 (20 residues), see Phobius details amino acids 478 to 496 (19 residues), see Phobius details PF12860: PAS_7" amino acids 626 to 739 (114 residues), 147.7 bits, see alignment E=3e-47 PF00512: HisKA" amino acids 780 to 846 (67 residues), 37 bits, see alignment 5.7e-13 PF02518: HATPase_c" amino acids 891 to 1000 (110 residues), 73.5 bits, see alignment E=3.7e-24 PF00072: Response_reg" amino acids 1023 to 1135 (113 residues), 38 bits, see alignment E=3.4e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1534)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QD53 at UniProt or InterPro

Protein Sequence (1140 amino acids)

>Shew_1534 integral membrane sensor hybrid histidine kinase (RefSeq) (Shewanella loihica PV-4)
MNLTLVVGVIALLYVSLLFLLAWGAERWFGRITKKIQTWIYGLSLAVYCSSWSFLGTVGQ
SAQDLWSFLPIFVGPILIFTFGFGLLRKMVIVSKAQNITSVADFIAARYGKSQTIAAIVT
LIALFGIMPYIALQLKAMVFSLNLFQPEDAQYDGAWVSLIVTGILAMFAILFGTRKLDAT
EHNPGMMLAIAFESLVKLAAFLLVGCVISFGFFDGFGDIWAQATERQLINNPELRLENLM
PQLLVGMAAFLCMPRQFHVMMVECKDEPTLVKAKYLFPLYLILFGMFVAPLALAGKLMLG
DSVSADTYVINLPLALDQPMLAVIALLGTLSAATGMVIVAVVTISVMVSNEWLVPLMLHS
GKIRQKNFSQFSQFLLNARRIAIVLILGLGYFSYLSFMNSDSLSALGMLSFGAFAQLAPA
LIGGMYWKHGNRGGVYLGLIVGFGLWCYILVQGMSDSQGVFGGELALLDSINPNIRDILT
ALLANLACYVLGSIWFRAGVAERIQASAFVTPGELKNTSNRKASPISQQDLLILASRFVS
PTRAYESFSRFSDEAVRSDSWHKVASPELIAHTEHMLAGVLGGSSASLVMDSVLQGRDLA
LDEVFSLVDEASSKIILSQDMLRGAIEHAYEGMSVVDKELNLVAWNYKYVELYDYPEDFL
QAGMPIADVVRFNAERGYCGPGDVEEQVAKRVQHMRNGTPHVSERERQDGKVIKIQGNPM
PSGGFVMTFTDITQYREQARALQEVNETLEARVKERTYELALLNSQLLEAKAQEEIANAS
KSRFLAAVGHDLMQPLNAARLFTASLAQYPNLDQEGRTTLSHVNSSLKIAGELLTDLLDI
SKLDSGMVEVNRRDFSVAELLEGLAVEFDAMAKDYGIKFSMVASSSIISSDLSLLRRVLQ
NFLTNAYRYAKGNRVLLGCRHRAGALEIQVNDTGCGIDEQELGEIFKEFKRLENPESKSV
SGLGLGLAIADRIARVLGHDIKVVSKLGLGSMFSITVPLGEKAKVALPKKANPVMQPLAG
VKVLCIDNEEAILAGLESLLSRWQCEVICASDLADARIKLGLKGVAPDIVLADYHLDHGQ
NGVDAMDGIRALYGAHLPGILITANTRKDLVEDVQQRGYHYMAKMVKPAALRALISSLVK