Protein Info for Shew_1510 in Shewanella loihica PV-4

Annotation: peptidase M28 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 553 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details PF04389: Peptidase_M28" amino acids 296 to 512 (217 residues), 168.6 bits, see alignment E=7e-54

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1510)

Predicted SEED Role

"Peptidase M28"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QD29 at UniProt or InterPro

Protein Sequence (553 amino acids)

>Shew_1510 peptidase M28 (RefSeq) (Shewanella loihica PV-4)
MRFALPTCALVLLSACSQHAPQLSSEEQVPAFNEARFRLDIQTLSSDKFEGRAPTTQGEA
LTLDYLSKAFAAAGLVGANDGSFLQPVPMVSYTASESQTVTLGDLPMHYRQDIVLGSRHD
NQGVEIKDAPLVFVGYGIKAPEYHWDDYQGLDMKGKIALILVNDPGFALPESGKFNGKAM
TYYGRWSYKFEEASRQGALGAIIIHDTKPASYPWSVVENSWTGAQQDLVLDKATQDSRVQ
VEGWITKEKASELFDSAGLSLATLSDRAASSPVNVALQKSASIAFANKAEYADSYNVVAT
LPGQGASDEQILFTAHWDHIGLDTSKQGDQIYNGALDNASGTAGILEIARQFATQAKQGK
PLKRSLTFVATTGEEQGLLGSRYYAANPVYPLDKTVAVFNLDSTNIYGRTSDYTIVGKGK
SQLETYLVEAASGQQRTAVSETRPESGGFFRSDHFSFAKYGVPAVFAGGGNNPVDDATAK
YKAEMKAQMKGCYHNVCDEYRADWDLSGALEDLGVYYQAAQRLGNNGDWPGYYAGTEFHQ
LRPATTKETTTAE