Protein Info for Shew_1374 in Shewanella loihica PV-4

Name: fliN
Annotation: flagellar motor switch protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 127 PF28396: SepQ_C" amino acids 26 to 114 (89 residues), 31.2 bits, see alignment E=2.2e-11 TIGR02480: flagellar motor switch protein FliN" amino acids 45 to 119 (75 residues), 111.3 bits, see alignment E=7.9e-37 PF01052: FliMN_C" amino acids 47 to 117 (71 residues), 86 bits, see alignment E=1.3e-28

Best Hits

KEGG orthology group: K02417, flagellar motor switch protein FliN/FliY (inferred from 100% identity to slo:Shew_1374)

Predicted SEED Role

"Flagellar motor switch protein FliN" in subsystem Bacterial Chemotaxis or Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QCP5 at UniProt or InterPro

Protein Sequence (127 amino acids)

>Shew_1374 flagellar motor switch protein (RefSeq) (Shewanella loihica PV-4)
MSTEDTGDDWAAAMAEQALEEAQAVELDELADSSKPLTEEEAAKLDTIMDIPVTISMEVG
RSFINIRNLLQLNQGSVVELDRVAGEPLDVMVNGTLIAHGEVVVVNDKFGIRLTDVISQT
ERIKKLK