Protein Info for Shew_1347 in Shewanella loihica PV-4

Name: flgD
Annotation: flagellar basal body rod modification protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 260 PF03963: FlgD" amino acids 47 to 108 (62 residues), 64.8 bits, see alignment E=9.9e-22 PF13861: FLgD_tudor" amino acids 118 to 254 (137 residues), 60.8 bits, see alignment E=1.8e-20 PF13860: FlgD_ig" amino acids 151 to 211 (61 residues), 59 bits, see alignment E=5.6e-20

Best Hits

KEGG orthology group: K02389, flagellar basal-body rod modification protein FlgD (inferred from 100% identity to slo:Shew_1347)

Predicted SEED Role

"Flagellar basal-body rod modification protein FlgD" in subsystem Flagellar motility or Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QCL8 at UniProt or InterPro

Protein Sequence (260 amino acids)

>Shew_1347 flagellar basal body rod modification protein (RefSeq) (Shewanella loihica PV-4)
MSLVNPLNTQVAQTSSTQSAKSVTPQASSSQATTQTTGNPFLDSMRLQEESSIPEAKSQE
LTQEDFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGITKLNEEIVNLNTVMTSSQA
LQASGLVGQKVLIPSDTGHISAEDPVLKGVISTPEPIESITVRIEDEKGQLVKTFTVDGS
DGGNIDVSWDGLDKDGEPVASGNYSIKASGKVDGKSEDLAVSTYAHVTSVSLGTASTGAI
LNLRGIGGIKLGDVLAVSET