Protein Info for Shew_1210 in Shewanella loihica PV-4
Annotation: stationary-phase survival protein SurE (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 100% identical to SURE_SHELP: 5'-nucleotidase SurE (surE) from Shewanella loihica (strain ATCC BAA-1088 / PV-4)
KEGG orthology group: K03787, 5'-nucleotidase [EC: 3.1.3.5] (inferred from 100% identity to slo:Shew_1210)MetaCyc: 57% identical to broad specificity 5'(3')-nucleotidase and polyphosphatase (Escherichia coli K-12 substr. MG1655)
RXN-14142 [EC: 3.1.3.89]; 3'-nucleotidase. [EC: 3.1.3.89, 3.1.3.6]; 3.1.3.6 [EC: 3.1.3.89, 3.1.3.6]; 3.1.3.6 [EC: 3.1.3.89, 3.1.3.6]; 5'-nucleotidase. [EC: 3.1.3.89, 3.1.3.6, 3.1.3.5]
Predicted SEED Role
No annotation
MetaCyc Pathways
- inosine 5'-phosphate degradation (3/4 steps found)
- purine nucleotides degradation II (aerobic) (8/11 steps found)
- UTP and CTP dephosphorylation I (5/7 steps found)
- NAD salvage pathway III (to nicotinamide riboside) (2/3 steps found)
- adenosine nucleotides degradation II (3/5 steps found)
- adenosine nucleotides degradation I (5/8 steps found)
- guanosine nucleotides degradation I (2/4 steps found)
- guanosine nucleotides degradation II (2/4 steps found)
- guanosine nucleotides degradation III (2/4 steps found)
- superpathway of guanosine nucleotides degradation (plants) (3/6 steps found)
- purine nucleotides degradation I (plants) (7/12 steps found)
- ureide biosynthesis (3/7 steps found)
- tunicamycin biosynthesis (2/9 steps found)
- NAD salvage (plants) (3/11 steps found)
- superpathway of purines degradation in plants (7/18 steps found)
KEGG Metabolic Maps
- Biosynthesis of alkaloids derived from histidine and purine
- Nicotinate and nicotinamide metabolism
- Purine metabolism
- Pyrimidine metabolism
Isozymes
Compare fitness of predicted isozymes for: 3.1.3.5, 3.1.3.6
Use Curated BLAST to search for 3.1.3.5 or 3.1.3.6 or 3.1.3.89
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A3QC82 at UniProt or InterPro
Protein Sequence (249 amino acids)
>Shew_1210 stationary-phase survival protein SurE (RefSeq) (Shewanella loihica PV-4) MIKILVSNDDGITAPGIAALSNALAKHYEVMTVGPDRNCSGASNSLTLTNPLRINKLDNG YISVSGTPTDCVHLAIREFYAHEPDIVVSGINAGANMGDDTLYSGTVAAAMEGRFLGLPA IAISLVGRELKHYDTAAYYACKIVAGLIDSPIASDQILNVNVPNLPLDEIKGIRVTRLGA RHRAEGMVRMQDPAGREIFWLGPPGEEQDASEGTDFHAVANGYVSVTPLTVDLTAFEQVP KIKQWIEQL