Protein Info for Shew_1144 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 185 PF02622: DUF179" amino acids 13 to 172 (160 residues), 181.5 bits, see alignment E=5.8e-58

Best Hits

Swiss-Prot: 100% identical to Y1144_SHELP: UPF0301 protein Shew_1144 (Shew_1144) from Shewanella loihica (strain ATCC BAA-1088 / PV-4)

KEGG orthology group: K07735, putative transcriptional regulator (inferred from 100% identity to slo:Shew_1144)

Predicted SEED Role

"UPF0301 protein YqgE"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QC17 at UniProt or InterPro

Protein Sequence (185 amino acids)

>Shew_1144 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MDSLQNHLLIAMPSLKDTFFERSVIYLCEHNEQGAMGLMINRPIGVDVNELLRQMELDDF
HTIESINSKVLVGGPVGQEKGFVLHTPQPQWSNSQQISDDLMLTTSRDVLTSLGSKEAPE
QFIVALGYAGWGRHQLEQELADNTWLSIPANIDLMFNTDHESRWQKATESLGFDIWQLSS
QAGHA