Protein Info for Shew_1061 in Shewanella loihica PV-4

Annotation: cytochrome c assembly protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 transmembrane" amino acids 6 to 24 (19 residues), see Phobius details amino acids 33 to 54 (22 residues), see Phobius details amino acids 61 to 82 (22 residues), see Phobius details amino acids 88 to 108 (21 residues), see Phobius details amino acids 124 to 149 (26 residues), see Phobius details amino acids 174 to 196 (23 residues), see Phobius details amino acids 208 to 228 (21 residues), see Phobius details amino acids 235 to 254 (20 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 37 to 260 (224 residues), 96.3 bits, see alignment E=1e-31

Best Hits

Swiss-Prot: 44% identical to YPJD_ECOL6: Inner membrane protein YpjD (ypjD) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: None (inferred from 100% identity to slo:Shew_1061)

Predicted SEED Role

"FIG001154: CcsA-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBT4 at UniProt or InterPro

Protein Sequence (262 amino acids)

>Shew_1061 cytochrome c assembly protein (RefSeq) (Shewanella loihica PV-4)
MVIFSASAIFFYSIALVLVVSRLFHADGPNRKAVAAFAAVAVVLHAAALSQAIFTGDGQN
FSLTNVISMVNWIIAFTFTILMFRLKVIVVVPVVYACSVISVALLWLLPPKYITHFELYP
EVLAHVVLSLMAYSALMIAALYAIQLAMIQNKLKKKQLMLSPAIPPLMTVEKQLYHLVII
GVVLLSLSLATGFIFLDDMFADGQGHKAILSIIAWFTYIAMLAQQYWVGCKIRTAVAYTL
TGATLLSLAYFGARIVKELILQ