Protein Info for Shew_0942 in Shewanella loihica PV-4

Annotation: RDD domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 169 transmembrane" amino acids 21 to 47 (27 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 114 to 137 (24 residues), see Phobius details PF06271: RDD" amino acids 12 to 149 (138 residues), 62.8 bits, see alignment E=2.3e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0942)

Predicted SEED Role

"FIG023103: Predicted transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBG5 at UniProt or InterPro

Protein Sequence (169 amino acids)

>Shew_0942 RDD domain-containing protein (RefSeq) (Shewanella loihica PV-4)
MSNIEHANFPRAGFFRRLGAIVYDLLLAVAVYMVAGAIGFGIFTALTSSGLLAMNGFEHV
SDLLNGTPLYKGVYQLWIAFCVGLFYVLFWSYGGQTLGMRAWRLKIQHPNGQSLSMITAT
ARLVWSLLGIGNLWILINGDKLALQDMMTRSEVVVLSKEANQMRNWHGV