Protein Info for Shew_0936 in Shewanella loihica PV-4

Annotation: peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1251 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 1231 to 1248 (18 residues), see Phobius details PF00082: Peptidase_S8" amino acids 159 to 508 (350 residues), 46 bits, see alignment E=2.3e-16 TIGR03501: GlyGly-CTERM domain" amino acids 1231 to 1250 (20 residues), 16.5 bits, see alignment (E = 5.4e-07)

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0936)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBF9 at UniProt or InterPro

Protein Sequence (1251 amino acids)

>Shew_0936 peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq) (Shewanella loihica PV-4)
MKFTKCTLALCVSTAILSSALQAKTESISAFGVEQAQTRATYTFSLAQTDKAASQLSAQD
ALNQQAQLLKQIQAIDPQARLVGSSHLLANTVTVEVQQDALAKIRALDAIAQTFHGEQLF
SEQTSIAQARSRIASQEASPLSEQANELMSPYTGKETAGTGVSIAIISTGIDYTLPIFGG
SGVYGEDNDPETPPPAGSYLEALENGAIEYAGFPTDVVAGGWDFVSENYGNDANPIDQNL
EYEAYNGWVYPTGTGTEIASIVHQLAPGAKLHAYKVYNVMEKNGRVSASGPSLNSIVSAF
EHAMDPNQDGDTSDHLDIALIDAAGAGAFFDIDGNASPSLLQMLIERVSAQGMTVVTHAG
NLGLYSLFGDAEAKHRNWISSEGSATSAITVGAVNHGEDGESKVIPDWAPMGPVRGSQAL
KPEIVTFTDEQPVAKISNPDETAAKLGSRSGAFTGAARIAAAAAVIKSQHPGFGPAEIKA
LLANTADISSILESDGVTPAELYAMGHGVENLTNAIASPIVAWETSSNQPYVQFGMHEVA
QSKTLHKRITLRNLSDTAQTYQLSYKMTGDKAGYQALTMSLPESVNIPAHSSVILPLTLT
ITGDKLPQWPLMGTGDHVDANLKATELNGYISLSADDQPEINLGWMVKARSNTSITKKPN
AIEYPNYLGYNPDLGKTEWEHLNWGRELYPDTESGSLNYQGYVASFVNESNTATTYQAYP
LLLQNPTLPEKLQGLKGHMIKAVGGAVYDDAQCSVTGKKLNIAVSLFQPADVALPNFFER
GPRLFTYDLFYEATVKENGWDKSFEGAYIYDDAQKVNQPFVALNDKGQPTTYVIDLNLPY
DYSNPTGRYKESTLPTFFANNGRNIVSQVCLEDMFHHELDSVEDFDQNFGFHIETDRHTG
KAQYEPITQFNPIKGGSYTTEESCYLDWFSGEEVCSETVFDRSLKIGFAGKEDDQVVGDL
AFEQTYTAQPGEEVYIASVGTSELGGFGRLPEPKGFMVVSLNDDFMQIGYNALVDDDGSA
IAKAKAGQVFSVEENAEVGTVVGEIALDTQGFFTSGSSSYTAFELHITNTLVGTPFAINQ
ETFELYVANPEALDFENNREFEVKITSQRGNSIGETETLTVMVQDINDMAPELNEAVAAS
LKVAPLSFKSGSSASFNLDVSGLFTDMEGNGLSYQVEGSSFAALSISGTQITGQVDSEGS
HPLTIIASDGEHEVSHTLQIEASQAQESDDGGALGWLSLLLGLTAMVRRRR