Protein Info for Shew_0929 in Shewanella loihica PV-4

Annotation: Ig family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1025 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 1003 to 1020 (18 residues), see Phobius details PF05345: He_PIG" amino acids 920 to 998 (79 residues), 39.1 bits, see alignment 1.7e-13 TIGR03501: GlyGly-CTERM domain" amino acids 1004 to 1023 (20 residues), 16.9 bits, see alignment (E = 4.2e-07)

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0929)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBF2 at UniProt or InterPro

Protein Sequence (1025 amino acids)

>Shew_0929 Ig family protein (RefSeq) (Shewanella loihica PV-4)
MLPHMITTKPLCWLAALGLLSSFQSYGVVYSEAQTAAITENMQHALAVENTGIVNEGHIH
DIYQFYASNKLAVGIDDHYLHTFFAKDDNTISYMGKQSIGEEDYYSNRDNISLSPDAKFM
YLKKRKDNIYQIEVMSLDSENKEWETKFTYTSIGTQSIDYGTQSQISDDGNYLFMWSSYQ
RNLSIAKRDKVTGELSPLILVKSDKLPSRVEGVEYDEANQTLLIFGQGSPYDSTSALIAL
KIDSINGSATEIARLPLSGTYQNIDYIQFDPNTKNIFITESGNINVYHLDETNNTLTTSY
SDSTYNTFNTYVSSKSVRLIDGKLFVQQSNNLAKIYRFNGGTSPSFSLEDTVTTSVYLNQ
LAIADGLGWRMMNEKAELFANSSTAYDFVKKDTLADGQQNMPIFGNSRTQIAFIESLDII
VAIDRQGIYSMLADASAQTPLYSKTWEQLGFDINASPFIDRVVVKGNNILLAGRYFNFTP
SSQNDRFMALKLDDKGVISTEVKPLTVSGNPFYYQSNNNSAQFDPSSGVAAFLSQDGGYA
FFSLDADNNPTFIDTLDSALFNTYYYYRSIGFVDGKPYVWDRENAKFYFVDVDVANKDVD
LGDGIDLSGSVPNDAVIITNGKNIYFINDSAVSSYKINYDLSLSFMSTSFVSGLYSNDLT
FISEDYVVNANYNSLNSYAIDRQSGAWKKLESIMAEDLGVSGLNTSKIAYGDSVKQNLIF
NANINYSTNILMRADLATSPVLTSALLPLLANEGEKVERNISEFVFDADNDDQLIFSSAN
LPSDAELTESGVLTYDTTSHDSGELDILVTDSNDMTLSISLPFLANRAPVVEAIDTYWIN
PGENITFNLADAVSDSEGQDFSFTKDEGSALEVNALGMAYGQLTQAGEHQVLATVTDTLG
AKASVSATVQVNSAPTASGLGAVSLKAGEAVSRDLASAFADADGHTLSFSAIGLPSGISL
SAQGQLSGSSKVTGKSSVVVTATDTMGLSISANLSIDIKEESSGGGSLGYLVLLLLPLAI
RRKFH