Protein Info for Shew_0892 in Shewanella loihica PV-4

Annotation: ATPase central domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 489 PF00004: AAA" amino acids 264 to 390 (127 residues), 106.9 bits, see alignment E=5.5e-35

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0892)

Predicted SEED Role

"ATPase, AAA family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBB5 at UniProt or InterPro

Protein Sequence (489 amino acids)

>Shew_0892 ATPase central domain-containing protein (RefSeq) (Shewanella loihica PV-4)
MQDIRDLTAVLRSNTPIVVIETYEEYRVIELLKRVSTILYQPLFTWSITQGLTRADVKMG
TQKFNTDPTEILGQIKSTSQQGIYVLCDFHPFVDNAPKNVRLLKEIALEYEALKHTIVLV
SHAFDIPPEIKRYCAHFSISLPDTAQLQNLIYEQIDRARADGLLQSVDEDAVLKLAENLR
GLTFDDARRLAHKAIVDDGAITHSDVDRINQGKFKLLDMEGVLQFEYDTSDFSQVAGLHN
LKKWLSQRSPASSAEGRVDHPKGILLLGVQGSGKSLAAKAVAGMWQRPLLRLDMSALYNK
YIGETEKNLRNALALADLMAPCVLWIDEIEKGLSSGSSDDGTSKRILGALLTWMAERKSE
VFLVATANDISALPPELMRKGRMDEIFFVDLPDDSVRQAIFLIHLQRRQLDPLNFDLAKL
SQASQGFSGAEIEQAIISARYTARALEQNVSQQLLLGELMKTRPLSVVMREKLAALRDWA
KGRTVNAHQ