Protein Info for Shew_0889 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 46 to 66 (21 residues), see Phobius details PF11742: DUF3302" amino acids 3 to 78 (76 residues), 140.9 bits, see alignment E=5.6e-46

Best Hits

Swiss-Prot: 65% identical to YIAW_ECOLI: Inner membrane protein YiaW (yiaW) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0889)

Predicted SEED Role

"GTPase (EC 3.6.1.-)" (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QBB2 at UniProt or InterPro

Protein Sequence (129 amino acids)

>Shew_0889 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MFLDYFALGVIIFVAVFLFYGVIVIHDIPYEIAKKRNHPQQDALHVAGWVSLFTLHAIWP
FLWIWATLYREDRGWGFNKVVERELALEDEVKQLNQTIAQLEQRLTAIEGGQKALHVVET
PSNDQEKES