Protein Info for Shew_0863 in Shewanella loihica PV-4

Annotation: ABC transporter-related protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 PF00005: ABC_tran" amino acids 19 to 163 (145 residues), 128.7 bits, see alignment E=3.7e-41 PF08402: TOBE_2" amino acids 275 to 342 (68 residues), 33.4 bits, see alignment E=6.2e-12

Best Hits

Swiss-Prot: 42% identical to FBPC2_PECAS: Fe(3+) ions import ATP-binding protein FbpC 2 (fbpC2) from Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672)

KEGG orthology group: K02010, iron(III) transport system ATP-binding protein [EC: 3.6.3.30] (inferred from 100% identity to slo:Shew_0863)

Predicted SEED Role

"Ferric iron ABC transporter, ATP-binding protein" in subsystem Iron acquisition in Vibrio or Transport of Iron

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.30

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QB87 at UniProt or InterPro

Protein Sequence (342 amino acids)

>Shew_0863 ABC transporter-related protein (RefSeq) (Shewanella loihica PV-4)
MSTLTIEQVHSDYQGQTILRGLDLVLHQGEIAALLGPSGCGKTTLLKAIAGLQPISQGRI
SINGRLLSGPETFVPSERREVGMIFQDYALFPHLTVAENILFGVKGLDKAARQARLGEML
ALVKLEGLGGRYPHELSGGQQQRVSIARALAYEPELLLLDEPFSNIDAKVRGEMMVEIRE
ILKQRGVSAVFVTHSKDEAFVFADKLALFKDGGIAQYGSAESLYAEPTDKYVAEFLGQVN
YLSCEVKDRARLQTLLGEVQSSSDLPKAAGYRGELLLRPEQLQMAGDEQGEGTIIARRFL
GNLCHYSILIGEEILAVRSPLHHFSPGQKVGLSVTPHPAVLF