Protein Info for Shew_0862 in Shewanella loihica PV-4

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 543 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 52 to 77 (26 residues), see Phobius details amino acids 89 to 106 (18 residues), see Phobius details amino acids 139 to 159 (21 residues), see Phobius details amino acids 196 to 219 (24 residues), see Phobius details amino acids 232 to 257 (26 residues), see Phobius details amino acids 287 to 312 (26 residues), see Phobius details amino acids 332 to 353 (22 residues), see Phobius details amino acids 373 to 394 (22 residues), see Phobius details amino acids 409 to 432 (24 residues), see Phobius details amino acids 463 to 481 (19 residues), see Phobius details amino acids 517 to 535 (19 residues), see Phobius details PF00528: BPD_transp_1" amino acids 71 to 257 (187 residues), 41.1 bits, see alignment E=8.1e-15 amino acids 358 to 541 (184 residues), 27.3 bits, see alignment E=1.5e-10

Best Hits

KEGG orthology group: K02011, iron(III) transport system permease protein (inferred from 100% identity to slo:Shew_0862)

Predicted SEED Role

"Ferric iron ABC transporter, permease protein" in subsystem Campylobacter Iron Metabolism or Iron acquisition in Vibrio or Transport of Iron

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QB86 at UniProt or InterPro

Protein Sequence (543 amino acids)

>Shew_0862 binding-protein-dependent transport systems inner membrane component (RefSeq) (Shewanella loihica PV-4)
MILGFPKSWSTLSYLTAICFALPLGAICIQAMVPDEAVFGHLMQTVLPTYIFNTLALMLF
VSLGALLIAVPAAWCVARCDFPGRNGFQWALLLPLAMPAYVVAYVYTDLLDYAGPIQTWL
RQVNGWLSPTDYYFPDVRTLGGASVMLALVLFPYIYLLARTAFMEQSPSLLHASRVMGAG
PWRSFWRLNLPMARPALAVGAALVAMETAADFATVSYFAVPTLTTAVYDTWLGYGSLAAA
AKLSAIILLVVFCLIGAERFARRKQQLFQKQTPITSHERYALSGVKAWLAAGYCAVLLLL
AFGLPVWVLLGYAWDYFDVSWNQAFWEYSLNSLIIALVVSLVTVVFALLLMFVRRCSPRK
IDILPSRLASTGYALPGTVLAIGVLVPLSLLDFAVNDLYAYFDQSGPGLIFSGTLFVLIF
AFAIRFAAIAIGSIENSYKQISPSLDMASVTMGMRPSAILSRIHLPLLRSGIFAAILLVF
IECMKELPAALLLRPVGFENLATYVYQFVSDEQLEQGALGAIVIVLVGLIPLIYLNRSLE
QGN