Protein Info for Shew_0616 in Shewanella loihica PV-4

Annotation: SH3 domain-containing protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 182 transmembrane" amino acids 153 to 171 (19 residues), see Phobius details TIGR04211: SH3 domain protein" amino acids 16 to 182 (167 residues), 149 bits, see alignment E=6.5e-48 PF08239: SH3_3" amino acids 24 to 73 (50 residues), 46.3 bits, see alignment E=2e-16

Best Hits

KEGG orthology group: K07184, SH3 domain protein (inferred from 100% identity to slo:Shew_0616)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3QAJ0 at UniProt or InterPro

Protein Sequence (182 amino acids)

>Shew_0616 SH3 domain-containing protein (RefSeq) (Shewanella loihica PV-4)
MMLISSTLMAAEQTRYISDNVYTFIHGGPGTQYRILGSVEAGQPVTYLGEMQNDYAKVVD
HKGREGWVDSKMLDSGKSFRVQLPEVQAELDRVKAELENITNESDSSTQVIRQLRSQLAN
AEEALAKASSERDSATRELTKLKNDERFELMKQGGMIAGIGVLIGVILVYLPRPRRRQKN
RW