Protein Info for Shew_0415 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 180 PF04751: DarP" amino acids 21 to 175 (155 residues), 149.9 bits, see alignment E=2.8e-48

Best Hits

Swiss-Prot: 56% identical to Y4079_SHEON: UPF0307 protein SO_4079 (SO_4079) from Shewanella oneidensis (strain MR-1)

KEGG orthology group: K09889, ribosome-associated protein (inferred from 100% identity to slo:Shew_0415)

Predicted SEED Role

"FIG138315: Putative alpha helix protein" in subsystem Putative TldE-TldD proteolytic complex

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9Y9 at UniProt or InterPro

Protein Sequence (180 amino acids)

>Shew_0415 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MMNIVGDSEHFKQPFDHDDDYVSRADIKREIAIYQELGKKLVSLSKSQLKKLELDELLHD
NILKAKTIRINSEAHRRQLHYVGKLMRSVDIDELQENLKNVLNQNRNESSKQNVAEKQKD
HLLTGGDEAIQTLLEQHPGLERQKLRQLVRQANKELAKQPETASKSAAELVKYLRAETGE