Protein Info for Shew_0408 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1436 transmembrane" amino acids 12 to 35 (24 residues), see Phobius details PF13116: YhdP" amino acids 6 to 1289 (1284 residues), 1095.6 bits, see alignment E=0 TIGR02099: TIGR02099 family protein" amino acids 8 to 1299 (1292 residues), 1156.4 bits, see alignment E=0

Best Hits

Predicted SEED Role

"FIG005080: Possible exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9Y2 at UniProt or InterPro

Protein Sequence (1436 amino acids)

>Shew_0408 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MSRPFCPRTFGRLCWQMIAIIVVLFALSVSLFRGLLPKLDQVRQELVSYIYEQYQVKVEV
SELTAEWQAFGPAVTIKNLVLPVQENLPVTFIIDNVHLKLDFWDSLVSASPQIENVIFEG
VKIALDLDRISQAGNGQQSSDAPVAEQNTDWLYALMLEQFDRFAITDVTMQLISSTHKYR
PIHIRDLRWRNLAGRHRAEGALFLDEQASEVERLSLAVDIRGDGHNPESLTGQLYLAANS
LDLGEWASRQENPYASGKKLPLEGVVNLQAWAEFSNRAFTAATVAFEPSWLQWQLKGEQQ
KFEIKAGQLNWQPQVSGWQLTSSDLAFVTNGQAWPALHIGARKRDDRLMASINQLDAEVL
LPLLPLVPGMDLDGLYLWQSMDPKGSIEQLKLGYGEQQGFALSAQLKQFAWQGSGAIPGA
EPIDLMLGMQGSDLYLSAPAQQYHLDFNGGFEEALSLAGDAFTVKYALGEAELIAPKLHF
YNADLDLDAAMKLDFAGEASLNLLADVQVKNAARAKYYFPKHAMSESLVDYLSGAIKAGQ
SQDAKVVWNGPLKHFPYDDNSGVFQAGFSLNQARYRFQPDWPEVTELSLNALFENAAMDI
WVNKGMLMQVPADGAHVAIPRMSHQTLLTVKADLRTQGEAAKQVLQRSPLADTVGATLEV
VQVQGEVSGKLDLSIPLYHGGKEAILGQVKFDNTPVYISEPGVQLDGVTGEVYFANEVVT
GEKIQARLFEQPVSFTFDTGKTNKHYGLNLDMQGQWALASLPAMLDNPLKDYYSGELDWQ
GAMTLIFDELGYRIQAQVKSDMQGVELSLPGKFAKTADSPRALSFELIGDNKQASLGAKL
GDQMEFWGGFDEESGDHLAHFDLLLGRLFKPGDQLKRQAGHLQLDMPATEFAPWLPIIKG
FMGDAALESSLDLAMREALAEQAPESPLVQAETEPKKSSFFPPLIAVDGQVRQLNLYGQP
LTELNLEAHPTEHGWRFEGNANEFSGRVDFYPDWSTQGLKLVASRFNFAPESKEGEASEV
ASDEVLSILPPLAVDVDQFSVYGKPLGHLVLQATPKNGDYQIQTIAITTPGITLKGKGAW
SNSEGQNLTEFQVDLKAKQFDEVSERLGIDPGLKEAPLDLQAELSWQGAPYAFSLETLNG
QISYKLGKGHLSEVSDKGARIFSLFSLDSLLRKLSLDFSDVFGKGLYFNAFTGTLKLDNG
VVKTTDSEMDAVAGNMRVRGYTDLTTESLNYDIRFVPQLASSVPTVVLLSTGGWTLGLGA
FALTKVLEPVIEVISEIRFRLTGTMSEPKLEELERKSKEIEIPESVLPRQRAPGAEAKPE
SVLPESKQPAQLKQEQQEQNPVKQPVLDAKPEGASADQQVMPSGVEIPKPAVVAMPEFKE
MPTGQQAPVEQKTETPQQQESQEKPVSKESSDAGQPITMSEWSRRRGEPQLYSRAA