Protein Info for Shew_0402 in Shewanella loihica PV-4

Annotation: MSHA biogenesis protein MshQ (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF20419: DUF6701" amino acids 274 to 899 (626 residues), 427.3 bits, see alignment E=7.3e-132

Best Hits

KEGG orthology group: K12287, MSHA biogenesis protein MshQ (inferred from 100% identity to slo:Shew_0402)

Predicted SEED Role

"MSHA biogenesis protein MshQ" in subsystem Mannose-sensitive hemagglutinin type 4 pilus

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9X6 at UniProt or InterPro

Protein Sequence (900 amino acids)

>Shew_0402 MSHA biogenesis protein MshQ (RefSeq) (Shewanella loihica PV-4)
MNRLLLTLLAGLFYLVFSTGVFAVPQCDAIFTDPPTGNHNPGLVPPDDIGPRLGNLTCTK
WGCSGHSSRFAPGDYDFATGDFQNKSYMSTTGKTARLYFDNLSMNNASINASGNAENLII
YVRGDLSVAGQNYLNGILYVAGTVTFTGNAWIDGAIASGGSLSFGGNGGADVDLGAVDDA
DFGGMCDKGGVSVDHYRLEFTSDALSCAAKDILLRACVNADCSTQASVSSSVELTKNGVK
YADVGFTGSAQTQVWHPDGGSVLLGLGTTAPSAPYRCYIDGALVANAQCLLDFADTGFYF
DVPDSTACKTGNSFNLFAVTKDTQTQQCKPLFANQTKTISFGFDYLRPATVNNPAQLTLN
SLLSPSDSIAIDGGGTQTMQVHFNGEGVASLSANYPEAGVVTLSAENNHTVSRPAGGSET
LVLTHSDSFTSAPAGFHFANVSANGRCDASDPYDADCKVLAAAGEPFSMQVTAACWQSDD
DKDFGNNKALQNFEHGGLSVVSQVVQPDTGVNGVLGSDSLAFSLSSGVSAQIIDDQSWSE
VGTMKVALGADVSFEGVTIPASQSSSEVFGRFTPAYLEITGNDPEAAQSCGPFTYLDQPF
GFKTGTEPNIQVAGLNAQDKVTSNYQIGDWWRYKHRDEADRNQWPERSYQDSTGLAVIGD
SQAPALSGQVNYRGSPNIAELIGAQPSYRRTQTPQEPFDAKFDLILSALDVSDEDGICYR
DSASAACRGFTFSDIGDGKAFELRYGRLVLENGYGPQSEGLRLPLRSEYVSSVTAGVTTW
TLNGDDNCSVFNTQTSLDAGESATSGLYRILPSGFPDLQAYSDSGLSLRSGALVNGVGNL
YFAIPNQAGEVPLKLHVEPWLKGYWNYPGNAADTLFDPRANAYFGTYRGHDKIIYWREVK