Protein Info for Shew_0313 in Shewanella loihica PV-4

Annotation: putative outer membrane adhesin like proteiin (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 500 1000 1500 2000 2500 3000 3500 4000 4500 4836 PF17803: Cadherin_4" amino acids 186 to 259 (74 residues), 33.2 bits, see alignment (E = 4e-11) amino acids 282 to 360 (79 residues), 52.8 bits, see alignment (E = 3e-17) amino acids 383 to 461 (79 residues), 53.9 bits, see alignment (E = 1.3e-17) amino acids 484 to 562 (79 residues), 44.3 bits, see alignment (E = 1.4e-14) amino acids 585 to 663 (79 residues), 52.5 bits, see alignment (E = 3.8e-17) amino acids 687 to 764 (78 residues), 40.9 bits, see alignment (E = 1.6e-13) amino acids 787 to 865 (79 residues), 52.5 bits, see alignment (E = 3.8e-17) amino acids 889 to 966 (78 residues), 40.9 bits, see alignment (E = 1.6e-13) amino acids 989 to 1069 (81 residues), 43.3 bits, see alignment (E = 2.8e-14) amino acids 1092 to 1173 (82 residues), 27.5 bits, see alignment (E = 2.3e-09) amino acids 1200 to 1280 (81 residues), 26.5 bits, see alignment (E = 5e-09) amino acids 1307 to 1387 (81 residues), 26.5 bits, see alignment (E = 4.9e-09) amino acids 1414 to 1494 (81 residues), 25.4 bits, see alignment (E = 1.1e-08) amino acids 1521 to 1601 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 1628 to 1708 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 1735 to 1815 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 1842 to 1922 (81 residues), 27.4 bits, see alignment (E = 2.6e-09) amino acids 1949 to 2029 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 2056 to 2136 (81 residues), 28.6 bits, see alignment (E = 1.1e-09) amino acids 2163 to 2243 (81 residues), 25.4 bits, see alignment (E = 1.1e-08) amino acids 2270 to 2350 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 2377 to 2457 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 2484 to 2564 (81 residues), 26.5 bits, see alignment (E = 4.9e-09) amino acids 2591 to 2671 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 2698 to 2778 (81 residues), 25.5 bits, see alignment (E = 1e-08) amino acids 2805 to 2885 (81 residues), 27.4 bits, see alignment (E = 2.6e-09) amino acids 2912 to 2992 (81 residues), 27.4 bits, see alignment (E = 2.6e-09) amino acids 3019 to 3099 (81 residues), 28.6 bits, see alignment (E = 1.1e-09) amino acids 3227 to 3308 (82 residues), 27.1 bits, see alignment (E = 3.1e-09) amino acids 3330 to 3411 (82 residues), 27.1 bits, see alignment (E = 3.1e-09) amino acids 4026 to 4102 (77 residues), 37.4 bits, see alignment (E = 2e-12) PF17963: Big_9" amino acids 190 to 289 (100 residues), 37.1 bits, see alignment (E = 3.2e-12) amino acids 293 to 390 (98 residues), 38.9 bits, see alignment (E = 8.9e-13) amino acids 394 to 491 (98 residues), 39.6 bits, see alignment (E = 5.4e-13) amino acids 495 to 592 (98 residues), 29.3 bits, see alignment (E = 8.9e-10) amino acids 596 to 690 (95 residues), 36 bits, see alignment (E = 6.8e-12) amino acids 697 to 794 (98 residues), 30.9 bits, see alignment (E = 2.7e-10) amino acids 798 to 892 (95 residues), 36 bits, see alignment (E = 6.8e-12) amino acids 899 to 996 (98 residues), 30.9 bits, see alignment (E = 2.7e-10) amino acids 1000 to 1099 (100 residues), 32.4 bits, see alignment (E = 9.4e-11) amino acids 1111 to 1204 (94 residues), 27.7 bits, see alignment (E = 2.8e-09) amino acids 1219 to 1311 (93 residues), 29 bits, see alignment (E = 1.1e-09) amino acids 1325 to 1418 (94 residues), 29.2 bits, see alignment (E = 9.6e-10) amino acids 1434 to 1525 (92 residues), 29.4 bits, see alignment (E = 8e-10) amino acids 1539 to 1632 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 1646 to 1739 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 1753 to 1846 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 1860 to 1953 (94 residues), 29.2 bits, see alignment (E = 9.6e-10) amino acids 1967 to 2060 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 2074 to 2167 (94 residues), 30.8 bits, see alignment (E = 3e-10) amino acids 2183 to 2274 (92 residues), 29.4 bits, see alignment (E = 8e-10) amino acids 2288 to 2381 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 2395 to 2488 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 2502 to 2595 (94 residues), 29.2 bits, see alignment (E = 9.6e-10) amino acids 2609 to 2702 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 2716 to 2809 (94 residues), 29 bits, see alignment (E = 1e-09) amino acids 2823 to 2916 (94 residues), 29.2 bits, see alignment (E = 9.6e-10) amino acids 2930 to 3023 (94 residues), 29.2 bits, see alignment (E = 9.6e-10) amino acids 3037 to 3130 (94 residues), 30.3 bits, see alignment (E = 4.3e-10) amino acids 3138 to 3235 (98 residues), 26 bits, see alignment (E = 9.4e-09) amino acids 3241 to 3338 (98 residues), 26.5 bits, see alignment (E = 6.5e-09) amino acids 3344 to 3441 (98 residues), 26.5 bits, see alignment (E = 6.5e-09) amino acids 4038 to 4119 (82 residues), 30.9 bits, see alignment (E = 2.8e-10) PF17892: Cadherin_5" amino acids 190 to 287 (98 residues), 28.6 bits, see alignment (E = 6.9e-10) amino acids 297 to 388 (92 residues), 29.2 bits, see alignment (E = 4.5e-10) amino acids 401 to 488 (88 residues), 29.4 bits, see alignment (E = 3.9e-10) amino acids 611 to 686 (76 residues), 27 bits, see alignment (E = 2.2e-09) amino acids 813 to 888 (76 residues), 27.2 bits, see alignment (E = 1.9e-09) amino acids 1156 to 1205 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 1263 to 1312 (50 residues), 34.5 bits, see alignment (E = 9.6e-12) amino acids 1370 to 1419 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 1477 to 1526 (50 residues), 34.2 bits, see alignment (E = 1.2e-11) amino acids 1584 to 1633 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 1691 to 1740 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 1798 to 1847 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 1905 to 1954 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2012 to 2061 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2119 to 2168 (50 residues), 33 bits, see alignment (E = 2.8e-11) amino acids 2226 to 2275 (50 residues), 34.2 bits, see alignment (E = 1.2e-11) amino acids 2333 to 2382 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2440 to 2489 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2547 to 2596 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2654 to 2703 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2761 to 2810 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2868 to 2917 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 2975 to 3024 (50 residues), 34 bits, see alignment (E = 1.4e-11) amino acids 3082 to 3132 (51 residues), 33.3 bits, see alignment (E = 2.3e-11) PF18200: Big_11" amino acids 209 to 289 (81 residues), 57 bits, see alignment (E = 1e-18) amino acids 309 to 390 (82 residues), 65.2 bits, see alignment (E = 2.8e-21) amino acids 410 to 491 (82 residues), 62.5 bits, see alignment (E = 1.8e-20) amino acids 510 to 591 (82 residues), 46.9 bits, see alignment (E = 1.4e-15) amino acids 612 to 692 (81 residues), 45.2 bits, see alignment (E = 4.9e-15) amino acids 712 to 793 (82 residues), 46.9 bits, see alignment (E = 1.4e-15) amino acids 814 to 894 (81 residues), 45.2 bits, see alignment (E = 4.9e-15) amino acids 914 to 995 (82 residues), 46.9 bits, see alignment (E = 1.4e-15) amino acids 1016 to 1099 (84 residues), 50.1 bits, see alignment (E = 1.4e-16) amino acids 3155 to 3234 (80 residues), 28.7 bits, see alignment (E = 6.8e-10) amino acids 3258 to 3337 (80 residues), 26.8 bits, see alignment (E = 2.6e-09) amino acids 3361 to 3440 (80 residues), 26.7 bits, see alignment (E = 2.8e-09) amino acids 4053 to 4133 (81 residues), 22.5 bits, see alignment (E = 5.6e-08) PF00353: HemolysinCabind" amino acids 4253 to 4270 (18 residues), 9.8 bits, see alignment (E = 0.00054) amino acids 4567 to 4584 (18 residues), 13.6 bits, see alignment (E = 3.5e-05) amino acids 4637 to 4669 (33 residues), 27.9 bits, see alignment (E = 1.2e-09) amino acids 4671 to 4701 (31 residues), 20.9 bits, see alignment (E = 1.9e-07) PF00092: VWA" amino acids 4285 to 4414 (130 residues), 40.1 bits, see alignment (E = 3.1e-13) PF13519: VWA_2" amino acids 4286 to 4403 (118 residues), 44.2 bits, see alignment (E = 1.7e-14)

Best Hits

Predicted SEED Role

"T1SS secreted agglutinin RTX"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q9N7 at UniProt or InterPro

Protein Sequence (4836 amino acids)

>Shew_0313 putative outer membrane adhesin like proteiin (RefSeq) (Shewanella loihica PV-4)
MCVKKLTTVQTIDNIRYLAKKRANSCNIKNQVVSFNSAGAGMKSLVTTKNGQVIDVKGKV
SLVTETEQKEVTIGEMIPEGSTILIAEQADLELAFADGTSFTSQSLNETSAAEADALNEI
EQLQALIASGEDPTAELPETAAGNTAASEGDSGFISVSRTGAQTLAGAGYTTSGFSVEQP
TVQAFTVSSDDAPTITANDTNTIAEDGVATGNVLDNDVDFDTELSVVTFTVDGQTVTAGA
TVEVEGGSLVINADGSYTFTPNDNWNGSVPVITYTTNTGESATLTINVTPVDDPSILAND
SNTIAEDTVATGNVLDNDSDIDSELSVVSFSVDGQTVTAGTTVEVEGGSLVINADGSYTF
TPNDNWNGSVPVITYTTNTGESATLTINVTPVDDPSILANDSNTVAEDTVATGNVLDNDS
DIDSELSVVSFSVDGQTVTAGTAVEVEGGSLVINADGSYTFTPNDNWNGSVPVITYTTNT
GESATLTINVTPVDDTTNAVNDFNTVAEDTIASGNVLDNDSDVDDTLSVVSFEIDGNSYI
AGNVATLDGGIFFLNADGSYSFVPNENWNGNVPVVTYITNTGATATLTIVVTPVDDATSA
VDDYINVPEDTVASGNVLDNDSDVDDELSVVSFEVNGNSYTAGSSVVLDGGTLVLNADGS
YSFTPNADWNGYVPEVTYTTNTGATAILTIYVDPVDDATNAVNDFNTVAEDTIASGNVLD
NDSDVDDTLSVVSFEIDGNSYIAGNVATLDGGIFFLNADGSYSFVPNENWNGNVPVVTYI
TNTGATATLTIVVTPVDDATSAVDDYINVPEDTVASGNVLDNDSDVDDELSVVSFEVNGN
SYTAGSSVVLDGGTLVLNADGSYSFTPNADWNGYVPEVTYTTNTGATAILTIYVDPVDDA
TNAVNDFNTVAEDTIASGNVLDNDSDVDDTLSVVSFEIDGNSYIAGNVATLDGGIFFLNA
DGSYSFVPNENWNGNVPVVTYITNTGATATLTIVVTPVDDTTNAVNDFNTIAEDTVASGN
VLDNDSDIDNELSVATFTVDGEDTVYNAGESVELEGGILVLNADGSYTFTPNDNWNGSVP
VVTYTTNTGDSATLTINVTPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSF
SIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTST
LTITVDPVNDDFTDDNEAINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVDGPFTLGQ
AVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFT
DDNEAINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLN
ADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSG
ATTGNVIDGTSVDGELSVQSFSIDGVDGPFTLGQAVNINGVGSFTLNADGSYSFTPAANY
NGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVD
GELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTD
GSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGV
TGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITV
DPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNIN
GVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDNNEV
INVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSY
SFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSGATTGN
VIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVP
VITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSGATTGNVIDDTSVDGELSV
QSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTD
TSTLTITVDPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVDGPFT
LGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVND
DFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSF
TLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNE
DSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPA
ANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEAINVNEDSGATTGNVIDGT
SVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYV
LTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSFSI
DGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLT
ITVDPVNDDFTDDNEVINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAV
NINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDN
NEVINVNEDSGATTGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNAD
GSYSFTPAANYNGPVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDNNEVINVNEDSGAT
TGNVIDGTSVDGELSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNG
PVPVITYVLTDGSSTDTSTLTITVDPVNDDFTDDNEVINVNEDSGATTGNVIDDTSVDGE
LSVQSFSIDGVTGPFTLGQAVNINGVGSFTLNADGSYSFTPAANYNGPVPVITYVLTDGS
STDTSTLTITVTPDNTDVANDAITVAEDTVASGNVLSNDEAGNTSVVSFTLDTDGNGSQE
SFTAGDSVTLAGGVLVVNSNGSYSFTPNQDWNGSVPVVTYTTNTGETATLTITVTPDNTD
VANDAITVAEDTVASGNVLSNDEAGNTSVVSFTLDTDGNGSQESFIAGDSVTLAGGVLVV
NSNGSYSFTPNQDWNGSVPVVTYTTNTGETATLTITVTPDNTDVANDAITVAEDTVASGN
VLSNDEAGNTSVVSFTLDTDGNGSQESFIAGDSVTLAGGVLVVNSNGSYSFTPNQDWNGS
VPVVTYTTNTGETATLTITVTPGVDGGNNVDLIVDDANTQGTATDSDSAGLSFTAGAYDV
TGFAFGNIGDINVSGLDANISWSLDSSGNLIGKIDGNAVLQLSLSGSNISAGATGTVTVS
VTLLDNLPHGTSVDELVINGITVVATDAANDTATGTVSVKVIDDGVTVNPLDLAGDNAAG
IYDGVINVDGADQGFSADLSGNISGAGTFSDSGITAGGLTVFYYVDPANPSMLIAYSDTS
GTPSAYDSGNSAQSVIFTLSIDPNGGTYQLDLKHAIDELSTVTVANMSGGKGGNTPAVYV
TFDGTNYIIDNDINDVDPNNAMVFSLTSTVGNISSTVNGNTNGFGVANAFVDQGENLIID
YANDVASASVSFDGATYIHFKAYDADGNLLGEGDITNGQTIGNLGEISYIEISTSSLDNH
SNFQFTGTSAENIVSSTVDVDLDFVVDVTDSDGDTSTGSIHVDLDAPGSTTTAPTALTSN
AVSMLSEADLYKDGTESDSQSLRFKSGSESITAFQFGDTDNIHVSGVNAKISWSFNDEGQ
LIGTFMGKEAIRLTLNGDRIESGEEGSVSVTAELLASFPHNVSTENLVISGINIVGVDAL
GQKAVSTITVSVSDYAEAVNDSVRGTEDHDLSGNLLTNDIDPDDELSIVSFKLSGNTYQA
DGSTINLAEGKLSIHADGRFTFEPNLHWSGTLPQIEYLTNTGDTAILDLNVVAVADAPIL
SASTGDVVQGEVALDINVALVDRDGSESLTDVTIQGVPSGVSLSAGTLNADGSWTVAVNQ
LGNLSIKADDSYNGDLEFTLTIKASSVEQSNSDSASSQTTLDVSLRNYHYDNGTDGDNVI
NGGEDNDVIVSDTTGIQVVQGENYNVAFILDSSGSMGSNRIESAKDQLLQVFNTLKASVG
GATSGTVNVLLVDFNSGTKAHVAVNLADSDAISKLESVLNEISSDNGRTNYEAAFETVID
WFSHGSAASNTGTNLTYFITDGETNNYNVDADPEDVWVYYTDNYRSGDDRTLSDLLNDYI
PGKELTYRGKVIIDEYGNINYWSGYSRYDMDGRQIGSIRVDENGDYYVAKIASGYSNGNG
TDVTAESEALAAFQVLNTLSNVEAIGIGSGISLNKLTPYDSDGNVATNINVSDLASIILG
SKEMLLQGDDTVNAGEGNDIVFGDLVQFDGIDGQGYAALQKYVALQLGEDASTVTIQDVH
EFVAANPALFDTSRDHDGDDIIAGNQGDDILFGQGGDDELHGGSGDDMLLGGHGSDMLIG
GAGEDILIGGLGDDTLTGGTGKADGEADTFVWQQGDTGTDHITDFDINQDKLDLSDLLQG
ENGGNLEDYLHFTVDNGSTTIEIDANNDGHVDQTIVLDGVDLSHLGTTDGQIINGLLGSE
GNGALIVDNANVNQAASSFAVPTTQDDDSQIQHLVP