Protein Info for Shew_0119 in Shewanella loihica PV-4

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF26971: TM-like_Thioredoxin-like_C" amino acids 65 to 180 (116 residues), 71.5 bits, see alignment E=4.8e-24

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0119)

Predicted SEED Role

"Hypotehtical protein in Cytochrome oxidase biogenesis cluster" in subsystem Biogenesis of cytochrome c oxidases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q943 at UniProt or InterPro

Protein Sequence (183 amino acids)

>Shew_0119 hypothetical protein (RefSeq) (Shewanella loihica PV-4)
MRSPKSRGAKPLLILLLVFVLPVAVAKLVLSLNLYHGGVTNKGELLPPDTNYARLAMANP
MPKHWQMIYLLPSQCDQACMNRLYILHQSQIALGRDQHRVNPIILLQADSDLAALQESEF
SFTTAQATEALSQMLTREEIIIVDPLGSLVMRYAQVEDEQAQLMLGKAMIADLRKMLKLS
RVG