Protein Info for Shew_0092 in Shewanella loihica PV-4

Annotation: molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 274 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13531: SBP_bac_11" amino acids 28 to 252 (225 residues), 188.3 bits, see alignment E=9.1e-60 TIGR01256: molybdate ABC transporter, periplasmic molybdate-binding protein" amino acids 31 to 251 (221 residues), 175.3 bits, see alignment E=8.4e-56

Best Hits

KEGG orthology group: K02020, molybdate transport system substrate-binding protein (inferred from 100% identity to slo:Shew_0092)

Predicted SEED Role

"Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q916 at UniProt or InterPro

Protein Sequence (274 amino acids)

>Shew_0092 molybdenum ABC transporter, periplasmic molybdate-binding protein (RefSeq) (Shewanella loihica PV-4)
MDLLRGFVLGCLLLLGVTPSWAAEVPAIAAASNIKFALDKIAADFTQDTGKRVRISYGSS
GNFVAQLRHGAPFELFLSADDKYIYQLHKLGVTQSDGEIYAIGRLALAAPKRSPLSLDTE
LVGVKRLLEQGELKRFAIANPDHAPYGERAREALQHLGLWQPLQPYLIYGENVSQAAQFA
LSGSTDGGIVALSLAMAPQFRAASHYVALPSEWHSPMNQRMVLTPKAGETAKAFYAYLSQ
AKARAVFLEFGFGLPADSQGDEVVDAANQPAGDH