Protein Info for Shew_0013 in Shewanella loihica PV-4

Annotation: amidohydrolase (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1067 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details PF07676: PD40" amino acids 100 to 126 (27 residues), 35.2 bits, see alignment (E = 1.8e-12) amino acids 195 to 214 (20 residues), 16.4 bits, see alignment (E = 1.5e-06) amino acids 546 to 566 (21 residues), 14.5 bits, see alignment (E = 5.7e-06) PF01979: Amidohydro_1" amino acids 712 to 1044 (333 residues), 73.1 bits, see alignment E=5.1e-24 PF07969: Amidohydro_3" amino acids 981 to 1043 (63 residues), 34 bits, see alignment 4.9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to slo:Shew_0013)

Predicted SEED Role

"FIG01058271: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A3Q8T8 at UniProt or InterPro

Protein Sequence (1067 amino acids)

>Shew_0013 amidohydrolase (RefSeq) (Shewanella loihica PV-4)
MKLGTPMLKQKLTPLCTAIALTLALPTWAADKDAPPAWQVNAPAKAPLEQVKIDVTEGTW
MNVSVSPDGKQIVFDLLGDIYQMPIEGGEAKPLAQGIAWQMQPVYSPDGKYIAFTSDEDG
GDNIWVMNADGTDPRPVTKETFRLLNSPAWSPDSQYLIGRKHFTGSRSLGAGEVWLYHVA
GGTGVKLTERPNEQKDLGEPAYSPDGRYVYFSQDATPGKTFHYSKDSVKGIYKIKRYDTQ
TGDIEVLVEGTGGAIRPTPSPDGTKLAYIKRDGFQSTLYLLDLKSGKKTKLYDKLDRDMQ
ETWAIHGVYPTMSWTANNEELVFWAGGKINRLDIESKSAKEIPFKVKTELAVQPSVRFKQ
NLDQDSFDVKMLRMAQVSPDGDKVVYEALGKLWVKRLPEGKVSRLTDLDDQVRELYPQWS
RDGKKIVFTTWDDDQQGSVRVINARGGRSKTLTQEPGKYVEPTFSPDGELVVYRKIKGGY
ITPRTWSQEPGLYVVDIKGKESRKITPDGFQPQFGAESDRVYFMDHGETPQLASINLHGF
QKRVHYTSKHATEFRVSPDGKQLAFAERFKVWVTPFAKHGETIEIGPKADNLPVTQLSVR
AGESISWNGDSDQLYWTLGPELYQMDVDADYQSDEKAAAIEPKITQIGFDKRADVPRGTI
AFVGGRVITMEEDKVIENGVVIVENNKIVAVGDANTQVPKGAQVIDIKGKSIMPGLFDAH
AHGAQGENEIIPQQNWELYANLALGVTSIHDPSNDTTEIFAASEQQKAGNIVGPRIFSTG
TILYGANMPGYTSHIDSVDDAKFHLERLKKVGAFSVKSYNQPRRNQRQQVIAAARELEMM
VVPEGGSLLQHNLTMIADGHTTVEHSLPAAAIYSDIKQFWSQTEVHYTPTLVVAYGGISG
ENYWYDKTDVWAHPRLSKYVPSDLLEARSMRRPTAPDAHYNHFNVARVANELNELGVKPN
IGAHGQREGLAAHWEMWMFAQGGMSNMEVLKTATINPAETFGMDHQLGSIKTGKLADLIV
IDGNPLENIRVTDKVSYTMVNGKLFDAESMNQLNGDKTKRKPFFFEI