Protein Info for DVU2153 in Desulfovibrio vulgaris Hildenborough JW710

Annotation: tail fiber protein, putative (TIGR)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1346 transmembrane" amino acids 93 to 114 (22 residues), see Phobius details amino acids 129 to 155 (27 residues), see Phobius details PF06805: Lambda_tail_I" amino acids 2 to 86 (85 residues), 109.9 bits, see alignment 6.8e-36 PF24801: FNIII-A_GpJ" amino acids 271 to 355 (85 residues), 38.8 bits, see alignment 9.8e-14 amino acids 462 to 513 (52 residues), 43.5 bits, see alignment (E = 3.5e-15)

Best Hits

KEGG orthology group: None (inferred from 100% identity to dvu:DVU2153)

Predicted SEED Role

"FIG00602550: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q72A44 at UniProt or InterPro

Protein Sequence (1346 amino acids)

>DVU2153 tail fiber protein, putative (TIGR) (Desulfovibrio vulgaris Hildenborough JW710)
MKADVVSVTGCPHPFRPGDRVHDVVPVGGTLESIVVRGLDDMGVPEALRGCGHAFVDGEY
VPRDRWADVTPRAGSTVTYRLVPAGGGGGSKALRGLLTVAVIALAVVSQQYYLATYGTTF
TTAAGVTAYTAGSMAASAAVAAAVTGAGMLAINSLVPLRPASLSQGTASSAADSPTYSIE
GARNTLRPWGTVPLLLGRHRIVPPQCAMPYTEVVGNDQYVRQLFCLGYAEMQIETGFRLG
ETDINAYSDVQLEVLPFADKTSRPAHYSNDVYEQSLSVQLKQSGGWQMRTTPQACDRIDI
DISLPRGLVQFNDRAQKVERTVLIEAQYAPKGSQAWASLGGPLQVGATSYQFERARQQVK
VGEYVDGNIYDIMEWRDVPQWHVICSSASGRIEQRAGAIGVDSPQPTPAGYTGIVQVRVV
GAVVSRVVIIAPAGSDAITYTTGTANNRAQLSLSPLSLPITSLEMTAAQTSALRRTVGVD
VPTGQYDVRVRRITADTDDSKIADETWWGVLRSTRKIAPLRFSRPLCVVSTRIRATGQLN
GALDELNCIAQTVCLDWDKATRTWVRRPTSNPASLFRYVLQGPAIARPVPDDRIDLDQLA
YWHEFCERRRLTYNRVHDYTASVEEVLDDVAAAGLAGRARPNGKWSVVIDEPRTRVAQHF
SPRTSWGFRSTKALPQQPHAWRVRFVNATQDWKQDERIVYADGYDADNATVFEGLELPGV
TDPEQVWVLGRHHIACARLRPEEYELYADMEHLVCTRGDLVVVQHDVPMWGVASGRVKSV
AGQVLTVDEPVGMEAGQAYRIRWRSADGASHVRDVVTVAGLSQTLQLSGTGEVPEAGDLW
LFGLLGRECAQLVVKGIEPGENLTARLVLVDYAPAVFDAATGPIPPFDSNITLQGDDPAK
PPHPPSVLSLRSDEAVLVRQASGALVPRIAVDYRASGGASVQVRVRPAGGSWRLAGSAAV
EDGVVYADGVEESVEYEVCVQASTRLGVGSGWTAPQRHTVVGRTTPPPAPSGVYLEGAHV
YWTMPDDAPVDVAGWEVLMGMDDTDPVERALLLTPGLLTERRFDVGPWAGRARRVFVRTV
DDIGLRSPAVSAVVNLGDEPVQNVVLTISEAAQGWPGTLADGIRIDGKVHAAGARAMWAG
GAMWSPTTMWGDAYLPASYVARLLVPEEATGARLRVAVQVVAGVIDAVEYAHGPRRPAWG
DSPMWGAAAMWGGVIPTAWNPMPDMLDVATGDEVYIRVTSRGGTQGVFADVQWTFDVPDA
DITLDGVAVPSSGMRLPVPAGLFRWIRAITFGLEFDGGTAASCRYLDKGVIEAGRVVSGP
LVQCIDSNGAPVAGRIDARLQGAAGG