Protein Info for SO2213.1 in Shewanella oneidensis MR-1

Annotation: hypothetical glucose-galactose transporter (NCBI ptt file)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 92 transmembrane" amino acids 22 to 45 (24 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to son:SO_2213.1)

Predicted SEED Role

"Predicted glucose transporter in maltodextrin utilization gene cluster" in subsystem Maltose and Maltodextrin Utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (92 amino acids)

>SO2213.1 hypothetical glucose-galactose transporter (NCBI ptt file) (Shewanella oneidensis MR-1)
MASSINTSSHTTSVSGADNGNYRFALVSLTSLFFMWGFITCLNDILIPHLKAVFSLNYTQ
AMLIQFCFFGRIFWCRFPRVNSLNDLAIKKGL