Protein Info for Dshi_4186 in Dinoroseobacter shibae DFL-12

Annotation: ABC transporter related (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 PF00005: ABC_tran" amino acids 34 to 173 (140 residues), 108.2 bits, see alignment E=8.3e-35

Best Hits

KEGG orthology group: K02049, sulfonate/nitrate/taurine transport system ATP-binding protein (inferred from 100% identity to dsh:Dshi_4186)

Predicted SEED Role

"ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component" in subsystem Alkanesulfonate assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LUH9 at UniProt or InterPro

Protein Sequence (273 amino acids)

>Dshi_4186 ABC transporter related (RefSeq) (Dinoroseobacter shibae DFL-12)
MKDALLDVPAIELRGIRKTFTLSEDRDAQKVLALDGIDLTIRQGEFLTIIGPSGCGKTTL
LKIIASLISHDEGDVVVEGKPVHEPDISRAMVFQTFGLFPWKTVIDNVTFPLTVRNFAPA
EAREIAMKHIEQVGLGKFVDAYPHQLSGGMQQRVGLARALSTGADILLMDEPFGAIDAQT
RELMQEELMRICQREQKTVVFITHDLDEAVLLADRVLLMSRGPGRVREVIDVDLPRPRFD
YDVRGHASFIKVRGHLWHELRNDLVEQRAEEMS