Protein Info for Dshi_4133 in Dinoroseobacter shibae DFL-12

Annotation: Oligosaccharide biosynthesis protein Alg14-like protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 84 to 95 (12 residues), see Phobius details PF08660: Alg14" amino acids 61 to 145 (85 residues), 31.2 bits, see alignment E=1.1e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_4133)

Predicted SEED Role

"Oligosaccharide biosynthesis protein Alg14 like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LUC7 at UniProt or InterPro

Protein Sequence (148 amino acids)

>Dshi_4133 Oligosaccharide biosynthesis protein Alg14-like protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MKKILALASAGGHWQQLMLMRPAFSAHDVVFATTLETLPEQFGAAPATIISDCNRHEKRA
VLVCAWQVLRLLRRERPDVVISTGALPGVIALALGRVLGARTIWVDSVANADEMSMSGRY
ARRVADLWLTQWDHIARDSGAEFAGSVL