Protein Info for Dshi_4015 in Dinoroseobacter shibae DFL-12

Annotation: parB-like partition protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 660 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF02195: ParBc" amino acids 23 to 111 (89 residues), 46.5 bits, see alignment E=1.7e-16

Best Hits

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 100% identity to dsh:Dshi_4015)

Predicted SEED Role

"putative plasmid stabilization protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LU34 at UniProt or InterPro

Protein Sequence (660 amino acids)

>Dshi_4015 parB-like partition protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MTASFAPLTVAIGDLVAHPANVRSNAPETYDPENIAHLKASIAVLGLLQPLLVQKLDGKY
AVLAGGRRHAALKELIADKATKGFTAKTKVDCRLVPEDCDVTTALSLAENITQAPMNAID
EFEAFARMMEVDGQTPETIAKTFGTTVAAVKRRLRYGLIHPDIRAAARAKTITLDTMKAF
AEHPSQEVQREVYEALTKEDSYLQAYTVRQALKSRGVQVSDDIGAFVREVYEARGGAIAA
DLLDEHSVLEDAALVETILLEKLRAAAEEARIKLGFAWADAMVRYDYATMADYGRVYPGP
IEPDEAAQKRVDEITAELEKLQLEMEDEGLEDDAYNALYERVDALEDEARDLQEAYSAED
LARAGVIASWSNGQVTLHIGLVRPEDTVKEEGARRSSTNTTGEEAPDAGEITYPASLAED
LKTERAMALGAAMALHPEAALDLTLFKLVSDVLASGMSVTQAIKIEARKEYRSHAKMDEI
DETSLEQVAAAHDVLDLSWLDDARSPADQFAAFRALKPGEKAKLVAYATASTTQSCFARD
RQRDSLMHDFEIEVMPDIRAHWTPNATLFNRFKKAWLLKILGEDLGLAQEAVTLASSSKK
EIVAFCDKLFAEPFATLTDAQRAAVASWCPPMMQTAGVAFDEAEPAAEIPEPDGEVAQAA