Protein Info for Dshi_3930 in Dinoroseobacter shibae DFL-12

Annotation: transcriptional regulator, GntR family (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 237 PF00392: GntR" amino acids 22 to 81 (60 residues), 49.7 bits, see alignment E=2.4e-17 PF07729: FCD" amino acids 91 to 212 (122 residues), 76.2 bits, see alignment E=3.1e-25

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3930)

Predicted SEED Role

"Transcriptional regulator, GntR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LTU1 at UniProt or InterPro

Protein Sequence (237 amino acids)

>Dshi_3930 transcriptional regulator, GntR family (RefSeq) (Dinoroseobacter shibae DFL-12)
MDMDDLRVHDAAPDRAETTQNPVFEGVERAIHEQRLPPGTRLAEAELTEIYGVSRTIVRA
GLQALSHAHLVTIRPNRGARVAQPTPEDAREVFEARELIEPRTAYEAARKATVADIAHLR
RHSAEEQEALAARQHGRALRLGGAFHVEIARISGQRTLEGFVEELVARSALIISLYWARE
RVRCDTQCHSRLIDAISRHDADEAESLMRSHLLDIHSALDFGDDSADDTDLRGMLLG