Protein Info for Dshi_3908 in Dinoroseobacter shibae DFL-12

Annotation: protein of unknown function UPF0118 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 383 transmembrane" amino acids 25 to 42 (18 residues), see Phobius details amino acids 48 to 65 (18 residues), see Phobius details amino acids 82 to 107 (26 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 227 to 246 (20 residues), see Phobius details amino acids 253 to 277 (25 residues), see Phobius details amino acids 280 to 306 (27 residues), see Phobius details amino acids 323 to 356 (34 residues), see Phobius details PF01594: AI-2E_transport" amino acids 31 to 357 (327 residues), 161.1 bits, see alignment E=2.1e-51

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3908)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LTR9 at UniProt or InterPro

Protein Sequence (383 amino acids)

>Dshi_3908 protein of unknown function UPF0118 (RefSeq) (Dinoroseobacter shibae DFL-12)
MDQVAQSKQTNVSGAGRAAMGRRNYALGLVAALLVIAMFAALRAMAPIAIPVVIAVFVAL
AVLPMDRAVAERLPKPLSWLGRAFVMVFLLSILATFIVGLSYCVTQIATQLPDVSERLSN
VLLERASSGQGNTDVWTAALTQLRNMLDDQGAALADMAFNWASGVAQGVASSTGALLAGL
FLVLFLVLLALSEADNWAAKLDNILTDRDRPWRQVTTRLGQALRRFLATRAVMGLITAVA
YTLWFLPFDLDLLLVWGILTFLMNFIPNLGSIVSGVLPSIYAFLTLDPGTALLLAAGLVL
IEQVIGNWLDPRVQGNSVAVSPLVILVAVLFWGWFWGIAGAFLATPITLAIMIFCNYVRA
LRPLALLLSNQRRAADLDDALSG