Protein Info for Dshi_3906 in Dinoroseobacter shibae DFL-12

Annotation: SSS sodium solute transporter superfamily (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 533 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 50 to 74 (25 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 126 to 148 (23 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 234 to 252 (19 residues), see Phobius details amino acids 273 to 296 (24 residues), see Phobius details amino acids 316 to 336 (21 residues), see Phobius details amino acids 367 to 388 (22 residues), see Phobius details amino acids 399 to 418 (20 residues), see Phobius details amino acids 425 to 442 (18 residues), see Phobius details amino acids 457 to 479 (23 residues), see Phobius details amino acids 515 to 532 (18 residues), see Phobius details TIGR00813: transporter, solute:sodium symporter (SSS) family" amino acids 41 to 432 (392 residues), 302.8 bits, see alignment E=2.1e-94 PF00474: SSF" amino acids 41 to 432 (392 residues), 225.4 bits, see alignment E=5.9e-71

Best Hits

KEGG orthology group: K03307, solute:Na+ symporter, SSS family (inferred from 100% identity to dsh:Dshi_3906)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LTR7 at UniProt or InterPro

Protein Sequence (533 amino acids)

>Dshi_3906 SSS sodium solute transporter superfamily (RefSeq) (Dinoroseobacter shibae DFL-12)
MGDAKFDLHWIDYAIVVIYFIGVIAHGVYVSRKNEEGADGYFLAGRSLPWYLIGFSLFAS
NMSGSSFVGLMGGAYANGIVIFNYEWTAALVLILFAIFVLPSFLKAKISTVPEFLEQRYD
VRSRRAFSIFTILAILFIDTAGALYAGGLVISNVTGYLNLWTAVAVLALVAGIYTILGGL
SAVVVTDTVQAILLIIGAAILFWLGLDEIGGWEQLFVDIPEGHDQLILPADDDFLPWTGL
WGVVLLGFYYWTINQFVVQRTLGAKNLKEGQIGALFAGFLKLPNIFLMIIPGVIALKLYP
ELETPDLAFPTLAFELMPIGVRGLIMAALIAAIMSSLDSAMNSASTLVVKDFVEPIWEVD
EGKQVWIGRLVTGAVMVFGAIYAPSIAGFESLFSYFQSSLSYIIPTIVVVYIVGLFVPWL
NGNGAFWTIILGLVVGIPLFIMKEVTGVWAGMGLPEIHYTIMSTLMMCLGLATHFGISAL
TRKADKENIEDLVWSAADTKAIFTQWEEPLWQDRTIWAGLLILSTIGFVAWFW