Protein Info for Dshi_3897 in Dinoroseobacter shibae DFL-12

Annotation: MgtC/SapB transporter (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 178 transmembrane" amino acids 24 to 44 (21 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 93 to 112 (20 residues), see Phobius details amino acids 124 to 154 (31 residues), see Phobius details PF02308: MgtC" amino acids 32 to 158 (127 residues), 109 bits, see alignment E=9.8e-36

Best Hits

KEGG orthology group: K07507, putative Mg2+ transporter-C (MgtC) family protein (inferred from 100% identity to dsh:Dshi_3897)

Predicted SEED Role

"Mg(2+) transport ATPase protein C"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LTQ8 at UniProt or InterPro

Protein Sequence (178 amino acids)

>Dshi_3897 MgtC/SapB transporter (RefSeq) (Dinoroseobacter shibae DFL-12)
MAVGERLANVGPIIQELTALTTLPWQVVLLRLAGALVLCGLIGLERETKSRPAGLRTHML
VGLAAALYCLIMLEVLANMDSYSDRVSSDPLRLVNAVTNGVAFLAAGMIVFSQGKVRGIT
TGTSLWLAAAIGLSVGFGFWMMAVATTLLALLVIRVLKLGEIRAAGGDSDHASDTETN