Protein Info for Dshi_3795 in Dinoroseobacter shibae DFL-12

Annotation: oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 PF00005: ABC_tran" amino acids 35 to 184 (150 residues), 111.6 bits, see alignment E=9.4e-36 PF13401: AAA_22" amino acids 50 to 213 (164 residues), 29.5 bits, see alignment E=1.6e-10 TIGR01727: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain" amino acids 235 to 321 (87 residues), 85.6 bits, see alignment E=9.9e-29 PF08352: oligo_HPY" amino acids 237 to 301 (65 residues), 65.2 bits, see alignment E=1.1e-21

Best Hits

Swiss-Prot: 47% identical to Y3404_BRUSU: Putative peptide import ATP-binding protein BRA0404/BS1330_II0401 (BRA0404) from Brucella suis biovar 1 (strain 1330)

KEGG orthology group: K02032, peptide/nickel transport system ATP-binding protein (inferred from 100% identity to dsh:Dshi_3795)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LTF8 at UniProt or InterPro

Protein Sequence (331 amino acids)

>Dshi_3795 oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) (Dinoroseobacter shibae DFL-12)
MTKQDTSGAVLSAHNLVKHFPLGGWGKNRRVVRAVDDVTFEVAPGETLGVVGESGCGKST
TARLLVQLLGADSGEVRFQGHVAGTEMPLKEFRRHVQMVFQDSYASLNPRMSMLDAIAFG
PTVHGVSEAEAQRIARDLLDRVGLDPSRFGPRYPHELSGGQRQRVNIARALAFQPEVIVL
DEAVSALDKSVEAQVLNLLMDLKRERNLTYVFISHDLNVVRHVSDRVMVMYLGEVAEIGP
TAEMYADPRHPYTRALLAAMPSLDPDRRTTEAPLSGDPPNPIDPPSGCRFHTRCAEAFGA
CSAQRPSNLRVGAGHYASCHLNDPKMREAAA