Protein Info for Dshi_3793 in Dinoroseobacter shibae DFL-12

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 317 transmembrane" amino acids 9 to 30 (22 residues), see Phobius details amino acids 99 to 123 (25 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 182 to 202 (21 residues), see Phobius details amino acids 243 to 266 (24 residues), see Phobius details amino acids 284 to 306 (23 residues), see Phobius details PF19300: BPD_transp_1_N" amino acids 1 to 76 (76 residues), 27.9 bits, see alignment E=2.4e-10 PF00528: BPD_transp_1" amino acids 113 to 315 (203 residues), 130.1 bits, see alignment E=8.3e-42

Best Hits

Swiss-Prot: 39% identical to GSIC_ECOL6: Glutathione transport system permease protein GsiC (gsiC) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K02033, peptide/nickel transport system permease protein (inferred from 100% identity to dsh:Dshi_3793)

MetaCyc: 38% identical to glutathione ABC transporter membrane subunit GsiC (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LTF6 at UniProt or InterPro

Protein Sequence (317 amino acids)

>Dshi_3793 binding-protein-dependent transport systems inner membrane component (RefSeq) (Dinoroseobacter shibae DFL-12)
MLTFLIRRVAYTIPIMLGVSLVCFALVHISPGDPLVSILPPDASVELQQQLMAIYGFDRS
YPEQFIRWLGRAVQGDLGNSIATGRPVTAEVLNAVGNTLILAVTATIIGFTFGGLFGFVA
GYFRDSWIDKLASTISVVGVSIPHYWLGMVLVIIFSVQLGWLPATGAGPRGSSEWAFDWE
HLQYLILPAVTMSVIPMGIVARTVRALVADILQQEYVTGLRAKGLLDRGVLAHVIKNAAP
TALAVMGLQLGYLLGGSILIETVFSWPGTGFLLGQAIFQRDLPLLQGTILVLAMFFVILN
LLVDVAQSALDPRLQRS