Protein Info for Dshi_3695 in Dinoroseobacter shibae DFL-12

Annotation: type III restriction protein res subunit (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 813 PF04851: ResIII" amino acids 451 to 593 (143 residues), 69.5 bits, see alignment E=5.1e-23 PF00270: DEAD" amino acids 454 to 594 (141 residues), 40.6 bits, see alignment E=3.4e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_4007)

Predicted SEED Role

"putative enzyme; Not classified"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LT61 at UniProt or InterPro

Protein Sequence (813 amino acids)

>Dshi_3695 type III restriction protein res subunit (RefSeq) (Dinoroseobacter shibae DFL-12)
MADRSDIEAELARVRARLADLDVERAQLQREVAALEARLAAEHVPAVRQPSFENAPVTNA
SPSHQKVELFRRLFAGRPDVFPVRWENRKTDRSGYSPSCANEWVKGICGKPKVKCGQCPH
QKFIPPDEGVIERHLRGDDGRGGDFVAGVYPLLLGDTCWFLAADFDKASWAEDANALLET
CRVKGVPAALERSRSGNGGHVWIFFSEPVSARLARQLGSVLITETMERRPEIGFASYDRL
FPNQDIMPLGGFGNLIALPLQNTARKAENSVFVDASLRPYDDQWAYLSSLPRLSAAAVTQ
LVEAAELSGRVLGVRMPVEDEQADEPWKMPPSRRSTPRRLDVPVPTTIKVTVADQIYIDR
SDLPSAMIAQLVRLAAFQNPEFYRAQAMRLPTFGKPRIVSCAELHPRHVALPRGSFDEAI
RFLSDHGATADLDDLRVDGARLPETVCFDGQLRQQQSRAFDALAEHDTGVLAATTAFGKT
VVASALIAHRARNTLVLVHRRELLNQWVERLGSFLQIDPKLIGTIGAGKRKLTGVIDVAL
IQSLVRKGEVDDIVADYGHLVVDECHHLSAASFELVARRSKARYVAGLSATVARKDGHHP
IIFMQCGPVRHQVSAKSQAAESGLRHRARERHTRFRLPEPLAMAERPSMPAIYAALAEDE
ARNDLIFDDVLKSLEAKRSPIILTERKDHLEHLHQRFSRFAKNIVVLRGGMSAKDRKAAH
AALNVDDDEERLILATGRYIGEGFDDARLDTLFLTMPIAWKGTLAQYVGRLHRRHDDKKD
VLVVDYVDSSVPVLARMAAKRRTGYRALGYVME