Protein Info for Dshi_3676 in Dinoroseobacter shibae DFL-12

Annotation: transposase Tn3 family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 772 transmembrane" amino acids 711 to 727 (17 residues), see Phobius details PF01526: DDE_Tnp_Tn3" amino acids 381 to 767 (387 residues), 443.7 bits, see alignment E=2.5e-137

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3676)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LT42 at UniProt or InterPro

Protein Sequence (772 amino acids)

>Dshi_3676 transposase Tn3 family protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MCSRLDALLTEMADGSVTRFVWLRQFEVGQNSADMNRLLGRLEFLQTMAVDRTVLSGVPP
HRIARLRRQGERYFAGDLRDISGDRRLAILVVCALEWRSAIADAVVETHDRIVGKTWREA
KRVCDARADDAKAALKDTLQGLSNFGSALLEAHEDQASLMEAVQNAGGWSSLRGLVSTAA
ELTDTLAADPLAHVVHGYHRFRRYAPRMLRALDIQAAPVAEPLLAAADIVAGTETTTTRP
LTFLRRASKWHRHLNHDDGNRLWEVAVLCHLRDAFRAGDIWLAHSRRYGDLKEALVPTEV
ARATPKLAMPFEPDLWLADRKSRLADGLERLARAARAGAIPGGSIEDGVLKIDRLTAAVP
EEADAMVLDLYNRLPEIRITDLLLEVDDEIGFTEAFTHLRTGVPCKDRVGMLNVLLAEGL
NLGLSKMAGATNTHDYFQLSRLSRWHVESDAMARALAMVIEGQSALPMAQFWGAGQTASS
DGQFFPTTRHGEAMNLINAKYGHEPGLKAYTHVSDQYGPFATQTIPATVNEAPYILDGLL
MTDAGQKIREQYADTGGFTDHVFAVTALLGFQFIPRIRDLPSKRLYLFDPASCPKELKGL
IGGKVREPVISSNWPNILRSAATMVAGAMAPSQLLRKFASYPRQHELAVALREIGRIERT
LFIIDWLLDADMQRRAQIGLNKGEAHHALKNALRIGRQGEIRDRTAQGQHFRMAGLNLLA
AIIIYWNTKHLGQAVAARQRVGLNCAPDLLAHSSPLGWAHILLTGEYRWAKK