Protein Info for Dshi_3669 in Dinoroseobacter shibae DFL-12

Annotation: Exopolysaccharide synthesis ExoD (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 transmembrane" amino acids 43 to 50 (8 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 147 to 167 (21 residues), see Phobius details amino acids 171 to 189 (19 residues), see Phobius details PF06055: ExoD" amino acids 11 to 188 (178 residues), 149.6 bits, see alignment E=3.3e-48

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3669)

Predicted SEED Role

"Exopolysaccharide synthesis, ExoD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LT35 at UniProt or InterPro

Protein Sequence (192 amino acids)

>Dshi_3669 Exopolysaccharide synthesis ExoD (RefSeq) (Dinoroseobacter shibae DFL-12)
MSEQTAVLVGIVDRIVAATDREQVGVDDLVQAVGHASFTPVLLIPAIAVATPLSGIPLFS
AMMGMLIFLVSVQMLLRRDRLWLPRWLLRRKTNGARVRSVFIRLRPAMAWLDAHTYARLT
AFVHRPLIFIPQTLCVLSGLIMPFLEFVPFSSSLVGGAVALLAFGMLARDGLFILLGLAL
YLGPLWLVTHVI