Protein Info for Dshi_3578 in Dinoroseobacter shibae DFL-12

Annotation: glycosyl transferase group 1 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 PF20706: GT4-conflict" amino acids 128 to 355 (228 residues), 39.4 bits, see alignment E=5.8e-14 PF00534: Glycos_transf_1" amino acids 240 to 383 (144 residues), 47.1 bits, see alignment E=3.1e-16 PF13692: Glyco_trans_1_4" amino acids 246 to 384 (139 residues), 51 bits, see alignment E=2.9e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3578)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LQ71 at UniProt or InterPro

Protein Sequence (412 amino acids)

>Dshi_3578 glycosyl transferase group 1 (RefSeq) (Dinoroseobacter shibae DFL-12)
MAAEGMRLNQDPLPLLLDVTRLASRIGDRRLSGVDRVEAAYLRFVLSQPDMPYGLVRSGF
GYLLLDRAGLQPLCDAVADETISWGRPDLLSRLARHRSKARAGVETTLRALSIARAPRSG
LGRMLRKCLPDGAHYLNVGETNFDGPVAMALRGLRRSWIDMVLHDTIPCDFPDLVTPASA
ARFDKRLRAMRTHADRIITATWAVQQAGCRHLGLGSEDARWCVAPFGLDLPEPDAKAPAR
HGLTRPYMLALGTLEPRKNITFLLEIWRQATATGSAMPDLVLCGARGWYPAKVFAALDAD
PLRGVHIHEINDALDPEVAGLIEGAEALLFPTVAEGFGFPPLEAIALGVPVICSDLPVLR
ETLGALPVYVAPGDSYAWTSKIKQGCAKPDPTAVEALLDRFTWEQHFARVFG