Protein Info for Dshi_3510 in Dinoroseobacter shibae DFL-12
Annotation: TspO and MBR like protein (RefSeq)
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 52% identical to CRTK_RHOCB: Protein CrtK (crtK) from Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
KEGG orthology group: K07185, tryptophan-rich sensory protein (inferred from 100% identity to dsh:Dshi_3510)Predicted SEED Role
"Regulatory protein TspO"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A8LQ03 at UniProt or InterPro
Protein Sequence (160 amino acids)
>Dshi_3510 TspO and MBR like protein (RefSeq) (Dinoroseobacter shibae DFL-12) MEFDWIVFGVFISACCAAAATGSMFPPDKWYDALRKPSWNPPNWVFPVVWSILYIVIAVA ATRVAVLDGNALAMAFWGLQIALNTLWSPVFFGLNRIKAGMFIIVALWLAVCGAMVSAWQ IDMVAGLLLAPYLVWVSIAAALNAAVWRLNPDKAGGPATA