Protein Info for Dshi_3496 in Dinoroseobacter shibae DFL-12

Annotation: ErfK/YbiS/YcfS/YnhG family protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF03734: YkuD" amino acids 70 to 198 (129 residues), 85.9 bits, see alignment E=2.2e-28

Best Hits

Swiss-Prot: 51% identical to YAT5_RHOBL: Putative L,D-transpeptidase in ATP synthase subunits region ORF 5 from Rhodobacter blasticus

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3496)

Predicted SEED Role

"ErfK/YbiS/YcfS/YnhG family protein/Tat domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LPG4 at UniProt or InterPro

Protein Sequence (200 amino acids)

>Dshi_3496 ErfK/YbiS/YcfS/YnhG family protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MSKDHRSPLSRRRFLAASGAASTLLASPALAQMTGTTELEQDVTQTVRRNVSSFRALDWR
PYFSNTRNGAVLVDISSRALHFWSEDQTEYKLYPTSVPLTEDLTRTGRTSITKKVEGPSW
RPTPAMRQRNPEWPEFIPPGPDNPMGTHAMHLTWTYYRIHGTHDTRKIGRRSSNGCIGLF
NEDIAELYSKCKVGTQVLLI