Protein Info for Dshi_3188 in Dinoroseobacter shibae DFL-12

Annotation: nitric oxide reductase F protein, putative (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 89 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 37 to 59 (23 residues), see Phobius details amino acids 70 to 88 (19 residues), see Phobius details PF03626: COX4_pro" amino acids 11 to 82 (72 residues), 40.4 bits, see alignment E=1.6e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3188)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LM12 at UniProt or InterPro

Protein Sequence (89 amino acids)

>Dshi_3188 nitric oxide reductase F protein, putative (RefSeq) (Dinoroseobacter shibae DFL-12)
MRAAAHIVSLRAWGALLALTVLGTVLSQDAVSWLRPQYEGLAILAVAIAKARIILLDYLG
LRGAPSWRRAGVTCLVFAGLLLAGLYMVG