Protein Info for Dshi_3172 in Dinoroseobacter shibae DFL-12

Annotation: cytochrome d1 heme region (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 517 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13442: Cytochrome_CBB3" amino acids 20 to 93 (74 residues), 49.7 bits, see alignment E=5.5e-17 PF00034: Cytochrom_C" amino acids 25 to 95 (71 residues), 23.7 bits, see alignment E=1.5e-08 PF02239: Cytochrom_D1" amino acids 129 to 280 (152 residues), 162.6 bits, see alignment E=1.6e-51 amino acids 312 to 508 (197 residues), 190.7 bits, see alignment E=4.4e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3172)

Predicted SEED Role

"Nitrite reductase associated c-type cytochorome NirN" in subsystem Dissimilatory nitrite reductase

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LLZ6 at UniProt or InterPro

Protein Sequence (517 amino acids)

>Dshi_3172 cytochrome d1 heme region (RefSeq) (Dinoroseobacter shibae DFL-12)
MTPSRLLSSLAVLVALTTPALADPAQIYAEECAMCHGGDRLGGTGPALIPETLSRMRGPH
LHDVIAHGRAATQMPGFEDVISETEIAALAEWLNTPLNEIPAWGPEQIAASATMNAGYVA
APAPVWDADPMNITLVVETGDHHVSVLDGDSWDVLDRFETPFAVHGGPKFTPDGHFVFVM
SRDGWVQKYDLWSLQEVGRVRAGLNSRNIAMSHDGKWLAVANYLPQTLTILSTEDLSVAR
VMDVISKSGQTSRVSAVYQAPQRQSFILALKDAPEIWEVATDPEADPVYEGFVHSREKDM
VEAIASSEGLFARRRIETAEPIDDFFFTPDYRFLIGAARDGAHGVVVNLNVGREIAKLPL
PGMPHLGSGISWIRGDTRVMATPHLREGKLSVIDIESWEVLSTIETEGPGFFLRSHENTP
YVWADVFFGPNKDVMHVIDKQSLEIVKTLRPEPGATVAHVEFDRDGTHALVSIWEEDGAV
IVYDAATLEEVKRLPMNKPSGKYNVWNKITFSEGTSH