Protein Info for Dshi_3141 in Dinoroseobacter shibae DFL-12

Annotation: ABC transporter related (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 352 PF00005: ABC_tran" amino acids 20 to 161 (142 residues), 118.6 bits, see alignment E=4.9e-38 PF08402: TOBE_2" amino acids 272 to 342 (71 residues), 22.4 bits, see alignment E=1.6e-08

Best Hits

Swiss-Prot: 57% identical to UGPC_YERPS: sn-glycerol-3-phosphate import ATP-binding protein UgpC (ugpC) from Yersinia pseudotuberculosis serotype I (strain IP32953)

KEGG orthology group: K10112, maltose/maltodextrin transport system ATP-binding protein (inferred from 100% identity to dsh:Dshi_3141)

Predicted SEED Role

"Maltose/maltodextrin transport ATP-binding protein MalK (EC 3.6.3.19); Multiple sugar ABC transporter, ATP-binding protein" (EC 3.6.3.19)

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.19

Use Curated BLAST to search for 3.6.3.19

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LLW5 at UniProt or InterPro

Protein Sequence (352 amino acids)

>Dshi_3141 ABC transporter related (RefSeq) (Dinoroseobacter shibae DFL-12)
MAEVILKDLTKRWGDFVGVDNQSLHVRDEEFLVLLGPSGCGKTTTMRMIAGLEDPTDGEI
WIGDRMVNDDLPKDRDVAMVFQNYGLYPHMTIFENIAYPLRVRGVDKAEIPPRVQRAAEQ
VELTKFLHRKPKALSGGQRQRVALARAIVRKPKVFLMDEPLSNLDAKLRVTMRAELKHLS
RELQITTVYVTHDQIEAMTLADRVAVMKHGVIQQLGTPDEIYNDPANLFVAGFIGSPAMN
LINGSVEDGMFVTTGGTRLVKVPSPDRARAILGVRADDMQVHEAGQGDIDVTIYAFENTG
ESTLLTVQWGKQRVIARGDRHLRKEQDDVVGISLNTDHLYLFDPDTEERIRM