Protein Info for Dshi_3045 in Dinoroseobacter shibae DFL-12

Annotation: glycosyl transferase family 2 (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 338 transmembrane" amino acids 274 to 301 (28 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 20 to 246 (227 residues), 49.8 bits, see alignment E=6.5e-17 PF00535: Glycos_transf_2" amino acids 21 to 148 (128 residues), 29.5 bits, see alignment E=1.1e-10 PF13632: Glyco_trans_2_3" amino acids 109 to 299 (191 residues), 36.8 bits, see alignment E=5.9e-13

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_3045)

Predicted SEED Role

"Glycosyl transferase, group 2 family protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LL29 at UniProt or InterPro

Protein Sequence (338 amino acids)

>Dshi_3045 glycosyl transferase family 2 (RefSeq) (Dinoroseobacter shibae DFL-12)
MSQSPSAPLPAEIRATRPLTVVVAACTRRRPKMLERLLGSYAALEVPENVTPIFLVVEND
ETARSTEVIAAFEDKLPGPLHAVLETVPGIPMARNRGLVEAAALGADLVLYVDDDETVAP
DWLTEIVAAWRGGTAELIGGPVRLTEPQAPLSGPQKTVFDGMVKRFATKEARAVDRMKAG
QADRVTVVTNNWLCDMRLVRDLGLRFDEALQFTGGSDTKFFRDARAKGVETGWAPAAIVY
ETVPPERLTLPYQYTRGRDQSATSFGQKVAEGKWASAATSILILLPLKALSLVLIALSLP
VTRSYGLVSLFRQAGWIAGRLTRLFGRASKLYVKTTGN