Protein Info for Dshi_3009 in Dinoroseobacter shibae DFL-12

Annotation: binding-protein-dependent transport systems inner membrane component (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 37 to 58 (22 residues), see Phobius details amino acids 111 to 137 (27 residues), see Phobius details amino acids 156 to 184 (29 residues), see Phobius details amino acids 226 to 250 (25 residues), see Phobius details amino acids 279 to 303 (25 residues), see Phobius details PF00528: BPD_transp_1" amino acids 126 to 313 (188 residues), 87.4 bits, see alignment E=5.1e-29

Best Hits

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 100% identity to dsh:Dshi_3009)

Predicted SEED Role

"(GlcNAc)2 ABC transporter, permease component 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LKF9 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Dshi_3009 binding-protein-dependent transport systems inner membrane component (RefSeq) (Dinoroseobacter shibae DFL-12)
MTVTPDPQAPNQQTAEANLDPVSRFNRFDNPWLNPRLLWGSGILLVIILGGIIGRMLWDT
DLVFTGSTPLKLPPLGFENLRRQEGIADYPLGTDGAGRDMLAMLIIGTPNTLMIGAIASV
IGMSLGIFLGFTAGFVGGRVDDTIRVLSDVMITIPPLLILVVFQASFGDVSLVMMAFLIA
GFMWQSPTRLIRAQVLSMKRSGYVQMAQLSGASTFHIMFREMLPNLIPYLFGSFIANVTT
AIVTAVGLEVLGLGPQRIPTLGRVIYDAINSGALIQNLWWWWGLPTALLATMFIALLLIN
LGLDEVSNPRLRKI