Protein Info for Dshi_2968 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 197 PF13403: Hint_2" amino acids 21 to 166 (146 residues), 125.9 bits, see alignment E=8.8e-41

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2968)

Predicted SEED Role

"Type I secretion target repeat protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LKB8 at UniProt or InterPro

Protein Sequence (197 amino acids)

>Dshi_2968 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MTLMTRVDAALAATKPALTGLACDAHVRTPCGERRVEFLRPGDLIVTRSDGLQPLRHILR
TRVSLAEMRADPALAPIRLTPRALGPLMPVRSLALAPDHPVRVPAHLLGQSVPDPTLRLT
ARSLADYFDEIFVDMSANGAIYHGLVFDRPQALMVNGVLVESATPDASSLRHMDEDTRKA
LERLFPHLRSKPVRLAL