Protein Info for Dshi_2873 in Dinoroseobacter shibae DFL-12

Annotation: NnrUfamily protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 signal peptide" amino acids 1 to 17 (17 residues), see Phobius details transmembrane" amino acids 36 to 53 (18 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 121 to 141 (21 residues), see Phobius details amino acids 162 to 182 (21 residues), see Phobius details PF07298: NnrU" amino acids 5 to 184 (180 residues), 186.1 bits, see alignment E=2.7e-59

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2873)

Predicted SEED Role

"NnrU family protein in cluster with Mesaconyl-CoA hydratase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LJK3 at UniProt or InterPro

Protein Sequence (187 amino acids)

>Dshi_2873 NnrUfamily protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MYFLVLIAGLALWAGAHYFKRLMPAQRAAMGDKGKAVVAVAIVASIVLMVIGYRGAEFVF
LWSPPAFMTHVNNTLMLFALWVYGSSAAKGAKAWPANKIRHPQLTGVKIWALAHLLVNGD
LASIVLFGGLLAWAVGEVILINKAEPDWTPPETAGMKTKIRLAVITVVLYLVIGGIHAWL
GVWPFPA