Protein Info for Dshi_2824 in Dinoroseobacter shibae DFL-12

Annotation: hypothetical protein (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 299 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details transmembrane" amino acids 38 to 57 (20 residues), see Phobius details amino acids 69 to 92 (24 residues), see Phobius details amino acids 112 to 141 (30 residues), see Phobius details amino acids 153 to 175 (23 residues), see Phobius details amino acids 190 to 212 (23 residues), see Phobius details amino acids 224 to 245 (22 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 281 to 298 (18 residues), see Phobius details PF00892: EamA" amino acids 157 to 296 (140 residues), 28 bits, see alignment E=1.1e-10

Best Hits

KEGG orthology group: None (inferred from 100% identity to dsh:Dshi_2824)

Predicted SEED Role

"hypothetical transmembrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LJ62 at UniProt or InterPro

Protein Sequence (299 amino acids)

>Dshi_2824 hypothetical protein (RefSeq) (Dinoroseobacter shibae DFL-12)
MALWIPVTIFAAFAQNLRFMLQRHLKVTGLSTGGATFSRFLFSAPLVAVIALGYGAVRGL
EFPALGPRFWVAATLGGTAQIFATMCVVALFAHRSFAIGITFKKTEVMLTALIGFVVLGE
AVSLGAALAIAIGFVGVVILSDPPEAVGDWRRLFNRGAALGLASGALFGVSAIGYRAASL
EIASDDVFQRASVTLMCVTAFQTALMAGYLAWRERGEITRVVASWRVSTLVGLSSLAGSL
AWFTAFTLQNAAYVKALGQVELVFSFLATTFVFREKTTGREVLGVAAIVASVLVLVLTL