Protein Info for Dshi_2688 in Dinoroseobacter shibae DFL-12

Annotation: cytochrome bd ubiquinol oxidase subunit I (RefSeq)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 464 transmembrane" amino acids 15 to 35 (21 residues), see Phobius details amino acids 54 to 74 (21 residues), see Phobius details amino acids 94 to 116 (23 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 184 to 204 (21 residues), see Phobius details amino acids 216 to 234 (19 residues), see Phobius details amino acids 324 to 347 (24 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 413 to 436 (24 residues), see Phobius details PF01654: Cyt_bd_oxida_I" amino acids 6 to 437 (432 residues), 528.3 bits, see alignment E=5.7e-163

Best Hits

KEGG orthology group: K00425, cytochrome bd-I oxidase subunit I [EC: 1.10.3.-] (inferred from 100% identity to dsh:Dshi_2688)

Predicted SEED Role

"Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)" in subsystem Terminal cytochrome d ubiquinol oxidases or Terminal cytochrome oxidases (EC 1.10.3.-)

Isozymes

Compare fitness of predicted isozymes for: 1.10.3.-

Use Curated BLAST to search for 1.10.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A8LII0 at UniProt or InterPro

Protein Sequence (464 amino acids)

>Dshi_2688 cytochrome bd ubiquinol oxidase subunit I (RefSeq) (Dinoroseobacter shibae DFL-12)
MDTLILSRIQFGANISFHILFPTITIALGWVLLFFKLRFQATGDGKWMEAYRFWVKVFAL
SFAMGVVSGITMSFQFGTNWPGFMEHVGNIAGPLLAYEVMTAFFLEAVFLGIMLFGVSRV
PPWLHTLATFLVAFGTTMSAFWILVLNSWMHTPQGYEIRDGVAYATNWLEIIFNPSLPYR
FSHTLLASGLTVAFLLAGLSAFRWLRGDRSDGVRAAMRTGVTLGALLIPVQIFVGDMHGL
NTLEHQPAKVAAMEGHWDGDKSPVPLVLFALPNAETRENDFEIAIPYLGSLILTHSLDGK
IPGLNDFVTEDGEVLHPPVAKVFWSFRVMVATGMAMLVMSWAAMWFMRRGRGIEGLPKPM
LYGFVAMGFSGWIATLAGWYTTEIGRQPWLVDGVLRTADAVADVPAGMVLGTLLAYLAVY
AALIFCYISVLTYLAAKAAKGEPTRIFDTPRSGEAEVRAITPAE